y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma19g32241.1 |
Family | GH28 |
Protein Properties | Length: 464 Molecular Weight: 50851.4 Isoelectric Point: 6.4999 |
Chromosome | Chromosome/Scaffold: 19 Start: 39991205 End: 39995270 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 431 | 0 |
VVCSSGEAILVVPQANYLLKPIRFSGPCEPNVEVQISGTLDASDDPSDYEDDSKHWLVFDNIKKLFVYGGGTIDGNGNIWWKNSCKRNKKRPCKDAPTAL TFYNCEDLTVENLRIENAQQIHVSFQDSVNVQVSGLNVTAPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSKDVEATDITCGPGHGISIGSLG AGKSKEFVSGIRVNRAKIFGTKNGVRIKTWQGGSGSASDIQFQNIEMDNVTNPIIINQNYCDKKKKPCKKLLSKKSAIQIKNVLYQNITGTSASDIAVRF DCSDKFPCQEIVLQNIDLQCEGGDDADAMCNNVEL |
Full Sequence |
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Protein Sequence Length: 464 Download |
MALLKHLLLS FTMIIISFVA CYSTLQEDPP SSIYVDHSPS IDDGGTVKNL IEQSTNVLSL 60 NRFDKRNSLK KVSVNDYGAK GNGDTDDTEA FKKAWDVVCS SGEAILVVPQ ANYLLKPIRF 120 SGPCEPNVEV QISGTLDASD DPSDYEDDSK HWLVFDNIKK LFVYGGGTID GNGNIWWKNS 180 CKRNKKRPCK DAPTALTFYN CEDLTVENLR IENAQQIHVS FQDSVNVQVS GLNVTAPEDS 240 PNTDGIHVTN TQNIQISSSV IGTGDDCISI VHGSKDVEAT DITCGPGHGI SIGSLGAGKS 300 KEFVSGIRVN RAKIFGTKNG VRIKTWQGGS GSASDIQFQN IEMDNVTNPI IINQNYCDKK 360 KKPCKKLLSK KSAIQIKNVL YQNITGTSAS DIAVRFDCSD KFPCQEIVLQ NIDLQCEGGD 420 DADAMCNNVE LSYLGHVRPR CNSKKRKAFT TITSILKYFS WYI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-79 | 60 | 429 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-98 | 65 | 440 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-110 | 99 | 432 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-129 | 66 | 439 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-146 | 49 | 442 | 401 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 448 | 1 | 462 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
GenBank | AAL30418.1 | 0 | 1 | 441 | 1 | 427 | AF434714_1 dehiscence-related endopolygalaturonase [Glycine max] |
Swiss-Prot | P35336 | 0 | 1 | 441 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 13 | 441 | 1 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 34 | 441 | 65 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 163 | 360 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-21 | 166 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 166 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 166 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 166 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |