y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si039483m |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 47041.7 Isoelectric Point: 9.22 |
Chromosome | Chromosome/Scaffold: 9 Start: 2480805 End: 2482564 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 63 | 405 | 0 |
RAACASRRPAVVLVPRGRRYLLKVITLHGPCRSSVAVAVKGTLVASPNRDDWSEKERRHWIVFRRVDRLTVDGGGAVDGNGETWWKHSCKINPDLPCKGA PTALSFHLCKNLRVEDLKIVNSQQIHVSVEDCTNVQLARLSITAPHSSPNTDGIHITRSKDVKVTNCKIRTGKYHQHVHRDDCVSIEDGTHNLHVSKVVC GPGHGISIGSLGDHNSWAQVSGITIDTVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMHAVDNPIIIDQNYCDKATPCEEQRSAVEVSNVVFKNIRGTT MTKDAIKLNCSMSVPCHGITLQNIDLRMHSGMGNTVSTCQNAK |
Full Sequence |
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Protein Sequence Length: 431 Download |
MASRLVLVFL APLLALLFVS GALQAAAAST NGTASTDVFS LDRYGARGDG RHDDTRALAR 60 AWRAACASRR PAVVLVPRGR RYLLKVITLH GPCRSSVAVA VKGTLVASPN RDDWSEKERR 120 HWIVFRRVDR LTVDGGGAVD GNGETWWKHS CKINPDLPCK GAPTALSFHL CKNLRVEDLK 180 IVNSQQIHVS VEDCTNVQLA RLSITAPHSS PNTDGIHITR SKDVKVTNCK IRTGKYHQHV 240 HRDDCVSIED GTHNLHVSKV VCGPGHGISI GSLGDHNSWA QVSGITIDTV QLYGTTNGAR 300 IKTYQGGSGY AKDITFQNMI MHAVDNPIII DQNYCDKATP CEEQRSAVEV SNVVFKNIRG 360 TTMTKDAIKL NCSMSVPCHG ITLQNIDLRM HSGMGNTVST CQNAKWRKYG TVRPQPCTAK 420 TYEILELSSI * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-82 | 37 | 429 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-97 | 39 | 418 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-105 | 73 | 405 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-133 | 40 | 415 | 378 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-133 | 38 | 417 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 18 | 420 | 27 | 441 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 34 | 419 | 88 | 478 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 38 | 419 | 61 | 434 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 38 | 420 | 60 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 7 | 420 | 12 | 451 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-23 | 135 | 392 | 115 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-17 | 131 | 403 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-17 | 131 | 403 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-17 | 131 | 403 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-17 | 131 | 403 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |