y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H04092.1 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 50953.4 Isoelectric Point: 4.7942 |
Chromosome | Chromosome/Scaffold: 8 Start: 58883305 End: 58886317 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 432 | 0 |
KAACAVESGVVLAPSGHTFMITSTIFSGPCKPGLVFQVDGVLMPPNGPDSWPKADSKNQWLVFYRLDGMTLTGTGTIEGNGEPWWDLPCKPHRGPSGQTA SGPCDSPTMIRFFMSSNLAVNGLRIQNSPQFHMKFDGCEGVQIEKLSISSPKLSPNTDGIHLGNTKSVGIYNSMISNGDDCISIGTGCSDINIEGVTCGP SHGISIGSLGVHNSQACVSNITVRNVMIRESDNGLRIKTWQGGSGSVTGISFENIQMEDVRNCIIVDQYYCLSKACRNETSAVYVNDLSYRNIKGTYNVI SPPIHFACSDTVPCTNITMSEVELLP |
Full Sequence |
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Protein Sequence Length: 478 Download |
MKIVQEVVLI WIVLALFLQN ACNVEGRYHY HKSQKKKGSS STSPVPPPES QDPAPPSPAY 60 SPVPAVPSPP GPDPSNSSSS GIYDVTAFGA VGDGSSDDTP AFTAAWKAAC AVESGVVLAP 120 SGHTFMITST IFSGPCKPGL VFQVDGVLMP PNGPDSWPKA DSKNQWLVFY RLDGMTLTGT 180 GTIEGNGEPW WDLPCKPHRG PSGQTASGPC DSPTMIRFFM SSNLAVNGLR IQNSPQFHMK 240 FDGCEGVQIE KLSISSPKLS PNTDGIHLGN TKSVGIYNSM ISNGDDCISI GTGCSDINIE 300 GVTCGPSHGI SIGSLGVHNS QACVSNITVR NVMIRESDNG LRIKTWQGGS GSVTGISFEN 360 IQMEDVRNCI IVDQYYCLSK ACRNETSAVY VNDLSYRNIK GTYNVISPPI HFACSDTVPC 420 TNITMSEVEL LPHEGELVDD PFCWNAYGVQ ETVTIPPIDC LRDGMPQTVA ESPAYSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-79 | 82 | 457 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-80 | 84 | 461 | 385 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-89 | 116 | 430 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-95 | 85 | 430 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-112 | 82 | 457 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 466 | 1 | 463 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 466 | 1 | 463 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 17 | 477 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 477 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 477 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 3e-26 | 84 | 448 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 5e-21 | 179 | 376 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 7e-20 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-20 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-20 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |