y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa004881m |
Family | PL1 |
Protein Properties | Length: 488 Molecular Weight: 53577.3 Isoelectric Point: 6.453 |
Chromosome | Chromosome/Scaffold: 7 Start: 15200766 End: 15203246 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 339 | 0 |
IVFPGNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQFISNVIIHNVHIHHCYPSGDANVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDTGMQVTIAFNHFGEELVQRMPRCRKGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAP |
Full Sequence |
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Protein Sequence Length: 488 Download |
MVPRTCIVLL FLLCSFSSLA TAFLNLTLPG QHPNPEEVVQ EVHRKVNASL ARRQMLQGTI 60 KYQDSSCLTG NPIDDCWKCD PNWPNNRQSL ADCAIGFGQY ALGGKGGEYY IVTDSTDDDA 120 VNPRPGTLRY AVIQTEPLWI VFPGNMLIKL SQELIFNSYK TLDGRGANVH IVGGGCITLQ 180 FISNVIIHNV HIHHCYPSGD ANVRSSPTHY GYRTKSDGDG ISIFGSKDIW IDHCSLSHCK 240 DGLIDAVMGS TGITISNNYF SHHNEVMLLG HSDDYLPDTG MQVTIAFNHF GEELVQRMPR 300 CRKGYIHVVN NDFTQWEMYA IGGSGNPTIN SQGNRYTAPS NPNAKEVTKR VETAEGKWKD 360 WNWRSEGDIL VNGAFFVASG KGVEFNYEKA YSVEPKSAVL IDQLIMHAGA LGVGGRDNNL 420 GKWSSGSNGD GNGLGSGPDY TDDMSGSSSR NNPLPLSSTS TLFSFFISLS CLLFSYIIPD 480 MHFTMRK* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-22 | 158 | 351 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 152 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 145 | 340 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 474 | 1 | 482 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 32 | 474 | 15 | 463 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 474 | 2 | 483 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 425 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 22 | 473 | 22 | 472 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-19 | 89 | 336 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 3krg_A | 0.00000000000002 | 161 | 313 | 130 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
PDB | 1bn8_A | 0.00000000000002 | 161 | 311 | 151 | 314 | A Chain A, Bacillus Subtilis Pectate Lyase |