y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006379m |
Family | PL1 |
Protein Properties | Length: 447 Molecular Weight: 49819.6 Isoelectric Point: 7.4631 |
Chromosome | Chromosome/Scaffold: 2 Start: 4483820 End: 4485879 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 362 | 0 |
AVIQTEPLWIIFSRSMVIRLSQELIMQSDKTIDGRGVRVHITGGAGITIQFVKNIIIHGLLIHDIVPGDGGMIRDSVDHYGFRTRSDGDGISIYGAQDIW IDHVSMTNCSDGLIDAIMGSTGITISNGHFTDHNEAMLFGASDSHTQDVKMQITVAFNHFGKRLVQRMPRCRFGYIHVVNNDYTHWNMYAIGGSKNPIII SQGNRFIA |
Full Sequence |
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Protein Sequence Length: 447 Download |
MVRKMGLLFL SIAFAYALPS ISANFLDSDE YWVKRSVQAW NNTLESYEPH PAKIVSHLNL 60 HSTRALEEIK DLELVSNSSR RHLAHGYDGP CMATNPIDRC WRCQANWADN RFRLADCGLG 120 FGYKAKGGKG GRIYVVNDSS DSDMVNPIPG TLRHAVIQTE PLWIIFSRSM VIRLSQELIM 180 QSDKTIDGRG VRVHITGGAG ITIQFVKNII IHGLLIHDIV PGDGGMIRDS VDHYGFRTRS 240 DGDGISIYGA QDIWIDHVSM TNCSDGLIDA IMGSTGITIS NGHFTDHNEA MLFGASDSHT 300 QDVKMQITVA FNHFGKRLVQ RMPRCRFGYI HVVNNDYTHW NMYAIGGSKN PIIISQGNRF 360 IAPPDNPFAK EVTKREYSPE SVWSQWIWRS EGDIFLRGAF FVQSGDPTYT SKHPEKYDLI 420 QAASATQVEI MTKFAGALGC KIGQVC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 6.0e-8 | 29 | 83 | 55 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-31 | 182 | 360 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-65 | 176 | 360 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-77 | 170 | 364 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 19 | 446 | 22 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 19 | 446 | 51 | 468 | unnamed protein product [Vitis vinifera] |
Swiss-Prot | P15722 | 0 | 4 | 446 | 7 | 449 | PEL59_SOLLC RecName: Full=Probable pectate lyase P59; Flags: Precursor |
RefSeq | XP_002311599.1 | 0 | 10 | 446 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 446 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 127 | 352 | 23 | 228 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 182 | 360 | 132 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000004 | 180 | 363 | 146 | 349 | A Chain A, Bacillus Subtilis Pectate Lyase |