y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29898.m000065 |
Family | PL1 |
Protein Properties | Length: 503 Molecular Weight: 54372.2 Isoelectric Point: 6.3977 |
Chromosome | Chromosome/Scaffold: 29898 Start: 30330 End: 35505 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 140 | 339 | 0 |
WIIFASSMTIKLKHELIFNSYKTIDGRGANVHITGNGCLTLQYVSHIIIHNIHIHHCKPSGNTNIAASPTHVGYRGRSDGDGISIFGSQKIWIDHCSLSY CTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDKYVLDSGMQVTIAFNRFGQALVQRMPRCRRGYIHVVNNDFLYWEMYAIGGSANPTINSQGNRYVA |
Full Sequence |
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Protein Sequence Length: 503 Download |
MLPFPNFCIL LICFSLLFIT TRTTATSFNL SLPHQHPDPE SIAQDVQRTI NASVSRRQLL 60 STLPKDQCQT GNPIDDCWRC DPNWANNRQR LADCTIGFGQ GSLGGRGGQI YVVTDSSDHD 120 PSNPTPGTLR YGVIQNEPLW IIFASSMTIK LKHELIFNSY KTIDGRGANV HITGNGCLTL 180 QYVSHIIIHN IHIHHCKPSG NTNIAASPTH VGYRGRSDGD GISIFGSQKI WIDHCSLSYC 240 TDGLIDAIMG STGITISNNY FSHHDEVMLL GHDDKYVLDS GMQVTIAFNR FGQALVQRMP 300 RCRRGYIHVV NNDFLYWEMY AIGGSANPTI NSQGNRYVAP ADPNAKEVTK RVETDEKDWA 360 DWNWRTDGDV LINGAFFVPS GAGLSAQYAK ASSVEPKSAA LITQLTLNAG VFGDARERDE 420 GISNPGFIGG GTTTGTTNTG SAGSTGGDGD YFGMIFGSGA SPSPPPLASS SSVVLSVLII 480 IVLYAMATND GAILSFPLSL LSL 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-21 | 159 | 335 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 142 | 337 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 147 | 340 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 29 | 421 | 24 | 413 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 8 | 484 | 16 | 509 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 4 | 466 | 2 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 416 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 493 | 1 | 493 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-16 | 91 | 338 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000009 | 184 | 410 | 114 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000009 | 184 | 410 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |