y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10011763m |
Family | PL1 |
Protein Properties | Length: 436 Molecular Weight: 47856.4 Isoelectric Point: 7.2372 |
Chromosome | Chromosome/Scaffold: 6 Start: 24596475 End: 24598576 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 148 | 353 | 0 |
IQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVIIHGIHIHNISPASGGMIRDSVDHVGNRGPSDGDAVSVFSSSNIWLD HLTLSKAQDGLIDAIQGSTAITISNCHLSNHDKAILLGATDTFTEDKKMQVTVAFNRFDKGLVQRMPCIRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQ GNRFFA |
Full Sequence |
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Protein Sequence Length: 436 Download |
MELARLKLIF LFSFIILIPC LSAIAEADEV WRRRAEEAMQ TTEQYYDPDP VAVASNLNMK 60 VQDLSKQTAA RRGLLNAESG QCEATNPIDK CWRCKENWAE DRQALAGCAL GFGSKATGGK 120 GGKIYEVTDS SDNNMENPKV GTLRHAVIQK EPLWIIFAKD MNIKLQQELV VQGNKTIDGR 180 GANVHIANGA GIRLQFVQNV IIHGIHIHNI SPASGGMIRD SVDHVGNRGP SDGDAVSVFS 240 SSNIWLDHLT LSKAQDGLID AIQGSTAITI SNCHLSNHDK AILLGATDTF TEDKKMQVTV 300 AFNRFDKGLV QRMPCIRFGF AHVVNNDYNQ WEMYAIGGLK GPTILSQGNR FFASDNKNAK 360 EVTKRMDCSP EEGNGWIWRS EGDVFLNGAY FNASGDPKKQ IKYELNDVIK PAPGTEVQRI 420 TKFAGALVCK PGQQC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-8 | 24 | 74 | 53 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-29 | 174 | 397 | 241 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-61 | 166 | 351 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-67 | 160 | 355 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28696.1 | 0 | 1 | 435 | 1 | 472 | unknown [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 16 | 435 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 435 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197015.4 | 0 | 1 | 435 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | XP_002311599.1 | 0 | 10 | 435 | 1 | 429 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 86 | 428 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 86 | 428 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 166 | 351 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-16 | 100 | 358 | 3 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000004 | 169 | 328 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |