y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g013239m |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 49895.1 Isoelectric Point: 7.7579 |
Chromosome | Chromosome/Scaffold: 00029 Start: 241984 End: 246162 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 366 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWID HNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MVVSYQLRYS VCTLLILWLF VTANASTEKH ELDSRFLKNE QLQSSNNSSM PERIEFDDEE 60 WTHEHAVDNP DEIAATVDMA IRNSTERRKL GYFSCGTGNP IDDCWRCDSR WYLRRKRLAD 120 CAIGFGRNAI GGRDGRYYVV SDPGDDDAVN PKPGTLRHAV IQDRPLWIVF KRDMVITLKQ 180 ELIMNSFKTI DGRGVNVHIA NGACITIQFI TNVIIHGINI HDCKPTGNAM VRSSPSHYGW 240 RTMADGDAIS IFGSSHIWID HNSLSNCADG LIDAIMGSTA ITVSNNYFTH HNEVMLLGHS 300 DSYTRDKVMQ VTIAYNHFGE GLIQRMPRCR HGYFHVVNND YTHWVMYAIG GSANPTINSQ 360 GNRYLAPENT FAKEVTKRVD TSTAVWRGWN WRSEGDMLLN GAYFTPSGAG SGASYARASS 420 LGAKSSSSVG TLTSNAGALR CRRGRLC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 186 | 362 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-69 | 179 | 364 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 173 | 367 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 447 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 38 | 447 | 35 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 40 | 447 | 32 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 38 | 447 | 35 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 1 | 447 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-17 | 168 | 355 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 189 | 341 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000002 | 189 | 409 | 151 | 383 | A Chain A, Bacillus Subtilis Pectate Lyase |