y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra024811 |
Family | PL1 |
Protein Properties | Length: 460 Molecular Weight: 51617.8 Isoelectric Point: 10.3672 |
Chromosome | Chromosome/Scaffold: 06 Start: 23568911 End: 23570983 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 178 | 372 | 0 |
RSMIIKLQQELIITHDKTIDGRGANVHIMGGAGLTLQFVKNVIIHNIHIKHIKCGAGGMIRDCEHHVGQRSKSDGDGINIFGATNIWIDHVSMTHCSDGM IDAIMGSTAITISNSHLTDHNEVLLFGGKDGDVIDKKMQITVAFNHFGKRLVQRMPRVRYGLVHVVNNDYTHWEMYAIGGNKNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 460 Download |
MASAHLNLGS YVFAFVSLSL AVVAPSVQGH VAVYDEYWTQ RQTDALRETI KSYDPNPFNV 60 TDHFNHHAAL AMETTGADNG TRRELRQVRR GRKTRRRGGR HHSLNAIDKC WRGDKNWHKN 120 RKKLADCVLG FGRKTTGGKK GQFYVVTDAS DHDLINPKPG TLRHAVTRDR PLWIIFGRSM 180 IIKLQQELII THDKTIDGRG ANVHIMGGAG LTLQFVKNVI IHNIHIKHIK CGAGGMIRDC 240 EHHVGQRSKS DGDGINIFGA TNIWIDHVSM THCSDGMIDA IMGSTAITIS NSHLTDHNEV 300 LLFGGKDGDV IDKKMQITVA FNHFGKRLVQ RMPRVRYGLV HVVNNDYTHW EMYAIGGNKN 360 PTIISQGNRF IAPHKETCKQ VTKREYTPYT EWKSWNWQSE RDYFLNGAYF VNSGRANAWS 420 PAPKNPIHRK FAIRPQSGTG VRRLTKDAGT LGCTPGKSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-20 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-23 | 187 | 370 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-52 | 185 | 370 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-62 | 180 | 373 | 205 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB69759.1 | 0 | 1 | 459 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 22 | 459 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_172894.1 | 0 | 1 | 459 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_178375.1 | 0 | 6 | 459 | 2 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002520133.1 | 0 | 12 | 459 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-21 | 135 | 361 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 4e-16 | 190 | 382 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000001 | 190 | 382 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |