y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000205892 |
Family | PL1 |
Protein Properties | Length: 388 Molecular Weight: 42770.6 Isoelectric Point: 9.5308 |
Chromosome | Chromosome/Scaffold: 018803242 Start: 4394 End: 5931 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 108 | 308 | 0 |
LWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKGGNVRSTPTHIGKRRGCDGDAIAVFASSHVWIDHCFLA RSADGLLDVTHASTAVTITNNYFSQHDKVMLLGHNDNFSADKNMRVTIAFNRFGAGLVERMPRVRFGYAHLANNRYDEWKMYAVGGSANPTIFSEGNYFI A |
Full Sequence |
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Protein Sequence Length: 388 Download |
MASLAPLVLF LLCFLTYIAP TFQAYSPDYY TTPNITLKNI MNVVDSCWRT KSNWATNRRA 60 LADCAVGYGK DALGGKYGRT YVVTTSNDDS VNPKPGSLRY GVIQTQPLWI VFAKDMVITL 120 KNELIMNSFK TIDGRGAKVE IAYGPCITVQ GVSHVIIHGI SIHDCKPGKG GNVRSTPTHI 180 GKRRGCDGDA IAVFASSHVW IDHCFLARSA DGLLDVTHAS TAVTITNNYF SQHDKVMLLG 240 HNDNFSADKN MRVTIAFNRF GAGLVERMPR VRFGYAHLAN NRYDEWKMYA VGGSANPTIF 300 SEGNYFIAPE TSYAKQVTKX EAGGSWNNWK WRSSGDVFKN GAFFVQSGYG NCYPLYSRKQ 360 SFKVFPGAMV PALTSNAGPL RCFVGKVC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-23 | 189 | 306 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-56 | 121 | 306 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 115 | 309 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 7 | 388 | 6 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 388 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 388 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 388 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 21 | 388 | 20 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 42 | 378 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 42 | 378 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 110 | 308 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-16 | 189 | 306 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.000000000000007 | 131 | 378 | 90 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |