y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_007840m |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48549.7 Isoelectric Point: 8.3797 |
Chromosome | Chromosome/Scaffold: 05957 Start: 18014 End: 22485 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 153 | 358 | 0 |
IQERPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWID HNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYARDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 440 Download |
MAISPRCFCV CALIVLVLFV SVKSSTEKSR FEQKQGLQSS KNSSMADGSG DAWNEHAVEN 60 PEVVASVVDH RSIHNGTARR NLGFFSCVTG NPIDDCWRCD PNWQRNRRRL ADCGIGFGRN 120 AIGGRDGRYY VVTDPRDDDP VNPKPGTLRH AVIQERPLWI VFKRDMVITL KQELIMNSFK 180 TIDARGVNVH IANGACITIQ FITNVIIHGL HIHDCKPTGN AMVRSSPTHY GWRTMADGDA 240 ISIFGSSHIW IDHNSLSNCA DGLVDAIMGS TAITISNNYF THHNEVMLLG HSDSYARDKQ 300 MQVTIAYNHF GEGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSADPTIN SQGNRYLAPN 360 NAFAKEVTKR VDTSDHVWRH WNWRSEGDLL LNGAYFTPSG AGAAASYARA SSLGAKSSSM 420 VGTITSSAGA LSCRKGRQC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-26 | 178 | 354 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-80 | 165 | 360 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 439 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 27 | 439 | 28 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 1 | 439 | 1 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 1 | 439 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 4 | 439 | 6 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 432 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 432 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 148 | 358 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 239 | 333 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000002 | 181 | 430 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |