y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_013270m |
Family | PL1 |
Protein Properties | Length: 287 Molecular Weight: 31418.6 Isoelectric Point: 6.8292 |
Chromosome | Chromosome/Scaffold: 05474 Start: 94118 End: 95112 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 286 | 0 |
IIFAGDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTYVRDSPGHYGWRTESDGDGVSIFGGSHVWIDHCTLSNC NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDGYTRDKNMQVTIAFNHFGEGLVQRMPR |
Full Sequence |
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Protein Sequence Length: 287 Download |
MTIPISLSSL FLLALAASFI SSSSSPVQDP ELLVQEVHRR INASRRNLGF LSCGTGNPID 60 DCWRCDPKWE KNRQRLADCG IGFGKHAIGG RDGKIYIVTD SGDDDPVNPK PGTLRYGVIQ 120 DEPLWIIFAG DMVIKLKEEL IMNSFKTIDG RGASVHIAGG PCITIQYVTN IIIHGLNIHD 180 CKQGGNTYVR DSPGHYGWRT ESDGDGVSIF GGSHVWIDHC TLSNCNDGLI DAIHGSTAIT 240 ISNNYMTHHN KVMLLGHSDG YTRDKNMQVT IAFNHFGEGL VQRMPR* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.006 | 151 | 252 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 6.0e-21 | 144 | 286 | 153 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-47 | 137 | 286 | 173 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-55 | 131 | 286 | 167 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABO28477.1 | 0 | 23 | 286 | 22 | 287 | pectate lyase precursor [Glycine max] |
GenBank | ACU21247.1 | 0 | 23 | 286 | 22 | 287 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 23 | 286 | 27 | 290 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 23 | 286 | 21 | 284 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002322215.1 | 0 | 23 | 286 | 21 | 284 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 286 | 2 | 232 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 286 | 2 | 232 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000009 | 126 | 286 | 50 | 200 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.0000000002 | 147 | 286 | 151 | 303 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.0000000005 | 147 | 286 | 151 | 303 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |