y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00025288m |
Family | PL1 |
Protein Properties | Length: 287 Molecular Weight: 31863.9 Isoelectric Point: 9.0907 |
Chromosome | Chromosome/Scaffold: 0357249 Start: 12 End: 912 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 26 | 205 | 0 |
DMVTIDGRGAQVHIVGAQITLQSVAHVIIHGVHIHDAAPHSGGVIRDSKRHHGLRSRSDGDGISVLSSSHVWIDHVSMYRCADGLVDVVNGSTGITVSNS HFTKHDHVMLFGASNDSPQDAAMQVTVAFNHFGKGLVQRMPRCRYGFFHVVNNDYTHWRMYAIGGNKNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 287 Download |
WSIPRKGTLR YGAIQDRPLW IVFARDMVTI DGRGAQVHIV GAQITLQSVA HVIIHGVHIH 60 DAAPHSGGVI RDSKRHHGLR SRSDGDGISV LSSSHVWIDH VSMYRCADGL VDVVNGSTGI 120 TVSNSHFTKH DHVMLFGASN DSPQDAAMQV TVAFNHFGKG LVQRMPRCRY GFFHVVNNDY 180 THWRMYAIGG NKNPTIISQG NRFIAPDDPN AKEVTKREYT PYAEYKDWVW KSQGDVMMNG 240 AFFNESGGQN ERKYDHLDFV PAKHGSYVGQ LTRFAGALTC RVGHPC* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-25 | 86 | 203 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-55 | 29 | 203 | 183 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-61 | 29 | 207 | 188 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA16476.1 | 0 | 3 | 286 | 142 | 438 | pectate lyase homolog [Zea mays] |
DDBJ | BAD68402.1 | 0 | 3 | 286 | 145 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
GenBank | EAY99626.1 | 0 | 3 | 286 | 145 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
RefSeq | NP_001056786.1 | 0 | 3 | 286 | 55 | 348 | Os06g0145100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437815.1 | 0 | 3 | 286 | 148 | 444 | hypothetical protein SORBIDRAFT_10g003090 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 4 | 279 | 53 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 4 | 279 | 53 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 39 | 194 | 80 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 21 | 203 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000001 | 28 | 215 | 150 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL752563 | 197 | 91 | 287 | 0 |
FL751009 | 188 | 100 | 287 | 0 |
FL765617 | 186 | 102 | 287 | 0 |
FL790442 | 185 | 103 | 287 | 0 |
FL815701 | 185 | 103 | 287 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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