y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_028419m |
Family | PL1 |
Protein Properties | Length: 436 Molecular Weight: 49324.4 Isoelectric Point: 9.9109 |
Chromosome | Chromosome/Scaffold: 11495 Start: 458626 End: 460367 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 147 | 353 | 0 |
VIQKVPLWIVFAHSMVIRLNQELIISSDKTIDGRGANVHIAGGAGITVQFVKNVIIHGLWIHNIVSGNGGMIRDSVDHYGLRTKSDGDGISIFGSTNIWI DHVTMYNCQDGLIDAIMGSSAITISNCHFTHHNEVLLFGASDGYSGDTLMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSRNPTIIS QGNRFIA |
Full Sequence |
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Protein Sequence Length: 436 Download |
METLKFLFLS FAALAVIVHA NMDEFDEYWK QRADEAKENT LQAYRPDPFN VTNQLNDQVT 60 KALMNYNSTR RNLLRKQHRG PCKATNPIDR CWRCNSNWAT HRKKLAECVL GFGHRTTGGK 120 AGKIYIVNDP SDNDMVNPKR GTLRHAVIQK VPLWIVFAHS MVIRLNQELI ISSDKTIDGR 180 GANVHIAGGA GITVQFVKNV IIHGLWIHNI VSGNGGMIRD SVDHYGLRTK SDGDGISIFG 240 STNIWIDHVT MYNCQDGLID AIMGSSAITI SNCHFTHHNE VLLFGASDGY SGDTLMQITV 300 AFNHFGRGLV QRMPRCRWGF FHVVNNDYTH WLMYAIGGSR NPTIISQGNR FIAPDKIAAK 360 QVTKREYAVE SEWKNWRWRS NRDLMMNGAF FVESGAPLVK KQFTRQQVIK CRPGTYVTRL 420 TRYAGALECR EGKRC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12708 | Pectate_lyase_3 | 0.004 | 161 | 276 | 117 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
pfam04431 | Pec_lyase_N | 7.0e-16 | 21 | 73 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-29 | 116 | 351 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-67 | 167 | 351 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-78 | 161 | 355 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 14 | 435 | 20 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 12 | 435 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 7 | 435 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 4 | 435 | 8 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 435 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 86 | 427 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 86 | 427 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 155 | 342 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 4e-16 | 113 | 351 | 16 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.000000000000009 | 171 | 363 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |