y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra019209 |
Family | PL1 |
Protein Properties | Length: 417 Molecular Weight: 45642.7 Isoelectric Point: 8.4142 |
Chromosome | Chromosome/Scaffold: 03 Start: 25688895 End: 25690445 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 135 | 336 | 0 |
LWIIFQRDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCVTIQYVTNIIIHGVHIHDCKRGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLS NCEDGLIDAIMGSTAITLSNNYMTHHDKVMLLGHSDTYARDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFV AP |
Full Sequence |
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Protein Sequence Length: 417 Download |
MQTKKLFISI LSFLLYAPLI FSSPVPDPEA IVEEVHNTEE ARLPLLHHRQ PNRRLLAPPP 60 PPGPPPPPAS PTAPSGSAHW ESHRHRLADC AIGFGKNAIG GRDGRIYVVT DSGNDDPVTP 120 KPGTLRHAVV QDEPLWIIFQ RDMTIRLKEE LIMNSFKTID GRGASVHIAG GPCVTIQYVT 180 NIIIHGVHIH DCKRGGNAMV RSSPRHYGWR TVSDGDGVSI FGGSHVWVDH CSLSNCEDGL 240 IDAIMGSTAI TLSNNYMTHH DKVMLLGHSD TYARDKNMQI TIAFNHFGEG LVQRMPRCRH 300 GYFHVVNNDY THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKRWNW 360 RSSGDLLLNG AFFTPSGGAQ SSSYAKASSL GAKPSSLVGP LTVGSGALNC RKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-24 | 155 | 333 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-73 | 148 | 333 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-81 | 142 | 337 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK25850.1 | 0 | 1 | 416 | 3 | 408 | AF360140_1 putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAM65103.1 | 0 | 1 | 416 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAA22985.1 | 0 | 1 | 416 | 1 | 404 | putative pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_567707.1 | 0 | 1 | 416 | 3 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002322215.1 | 0 | 19 | 416 | 19 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 76 | 408 | 10 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 76 | 408 | 10 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 87 | 335 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000003 | 140 | 345 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000006 | 140 | 345 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |