y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT2G02720.1 |
Family | PL1 |
Protein Properties | Length: 456 Molecular Weight: 51257.5 Isoelectric Point: 10.0563 |
Chromosome | Chromosome/Scaffold: 2 Start: 763011 End: 765027 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 171 | 368 | 0 |
IFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFVRNVIIHNIHIKQIKRGAGGLIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCS DGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 456 Download |
MVNLGSYVFV FVALSLTVVV PSVQAHIAEY DEYWTQRQTN ALRETLESYD PNPENVTDHF 60 NYHAALAMET TGIVNETRRD LRQVGRGKKT TRRGGRFESL NAIDKCWRGD KNWDKNRKKL 120 ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL 180 QQELIITNDK TIDGRGAKIY ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF 240 GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG 300 GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII 360 SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF LNGAYFVQSG KANAWSATPK 420 NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-22 | 26 | 81 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-30 | 131 | 366 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-63 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-77 | 176 | 370 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB69759.1 | 0 | 1 | 455 | 5 | 459 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 18 | 455 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 455 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172894.1 | 0 | 1 | 455 | 5 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_178375.1 | 0 | 1 | 455 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-22 | 170 | 368 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-17 | 179 | 445 | 71 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.000000000000001 | 173 | 378 | 130 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |