y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023679 |
Family | PL1 |
Protein Properties | Length: 458 Molecular Weight: 50072.3 Isoelectric Point: 8.0917 |
Chromosome | Chromosome/Scaffold: 505 Start: 519895 End: 524043 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 171 | 376 | 0 |
IQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVD HNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYNA |
Full Sequence |
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Protein Sequence Length: 458 Download |
MAEPLRLFAL CTLLLVVLLV GVTATTRTGG GFPGLTLTRN VGTEPLQSSS NSSMAARRYD 60 SSTGEGVGES VNNEDAVQDP EEVVAMVETS IHNSTERRKL GYFSCGTGNP IDDCWRCDPH 120 WQKNRKRLAD CGIGFGRNAI GGRDGRYYVV TDPRDDDPVN PRPGTLRHAV IQDRPLWIVF 180 KRDMVIQLKQ ELIMNSFKTI DGRGANVHIA NGGCITIQFV TNVIIHGLHI HDCKPTGNAM 240 VRSSPTHYGW RTMADGDAIS IFGSSHIWVD HNSLSHCADG LVDAVMGSTA ITISNNHMTH 300 HNEVMLLGHS DSYTRDKQMQ VTIAYNHFGE GLIQRMPRCR HGYFHVVNND YTHWEMYAIG 360 GSADPTINSQ GNRYNAPVNR FAKEVTKRVE TAATAWKNWN WRSEGDLLLN GAYFTPSGAG 420 ASASYARASS LGAKSSSMVG TITSNAGALG CRRGRQC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 196 | 372 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-71 | 189 | 374 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 183 | 377 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACB12931.1 | 0 | 37 | 457 | 38 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
GenBank | ADD62392.1 | 0 | 39 | 457 | 34 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 39 | 457 | 14 | 425 | pectate lyase [Prunus persica] |
RefSeq | XP_002297822.1 | 0 | 1 | 457 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 37 | 457 | 38 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 109 | 449 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 109 | 449 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 178 | 374 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 199 | 351 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000003 | 199 | 448 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |