y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10000891m |
Family | PL1 |
Protein Properties | Length: 468 Molecular Weight: 50216.1 Isoelectric Point: 6.7883 |
Chromosome | Chromosome/Scaffold: 6 Start: 1189861 End: 1194092 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 105 | 311 | 0 |
VIQTEPLWIIFSGDMGINLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWI DHCSLGYCSDGLIDVILASTAVTISNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTINS QGNRYTA |
Full Sequence |
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Protein Sequence Length: 468 Download |
MFYHLVFLII KKLNNSLSRR QLLTYQQDDG TTASSPIPSC ITGNPIDDCW RCDPNWSANR 60 QQLADCSIGF GQGTLGGKGG RFYLVTDSSD NDAANPLPGT LRHAVIQTEP LWIIFSGDMG 120 INLKHELIIG SYKTIDGRGT NIQITGHGCL TIQQVSHVII HNVHIHHCKP SGNTLVASSP 180 THVGFRGVSD GDGISVSASH HIWIDHCSLG YCSDGLIDVI LASTAVTISN NYFSHHDEVM 240 LLGHDDRYTA DKGMQVTIAF NHFGEGLVQR MPRCRHGYIH VVNNDFTAWE MYAIGGSASP 300 TINSQGNRYT APVDPNAKEV TKRVDSNEKH WSGWNWRTEG DVMVNGAFFV PSGDGVSPAY 360 AKATSVQPKA AAVIDQLTVN AGVFGDPSGR NGQGGSFPGI TDGGGTITRG YSKSGPGGGG 420 GGGSDSDDGI FSVIFGNNSG AVAPRPGQVW SILFIIILYW FIPYHTR* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-22 | 124 | 307 | 200 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-58 | 124 | 309 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-63 | 118 | 312 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24172.1 | 0 | 119 | 467 | 1 | 348 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAQ87025.1 | 0 | 40 | 395 | 59 | 416 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 4 | 467 | 55 | 517 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 5 | 444 | 40 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002534016.1 | 0 | 9 | 444 | 46 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 44 | 383 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 44 | 383 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-21 | 63 | 309 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-16 | 127 | 329 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 2e-16 | 69 | 382 | 22 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |