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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna19804.1-v1.0-hybrid |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44858.8 Isoelectric Point: 8.1028 |
Chromosome | Chromosome/Scaffold: 3 Start: 1198692 End: 1199912 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 322 | 0 |
IQTEPLWIIFARDMQITLKQELIMNSFKTIDGRGVKVEIAYGGQITVQYVTNIIIHGLHIHHCKELRNAMVRDSPSHYGWRAKSDGDGISIFGAKHIWID HNSLSNCTDGLVDAVEASTAITISNNLFMDHDKVMLLGAQDGYTQDKVMQVTIVYNRFGPGVEQRMPHARYGNFHIVNNDYANGWKIYAVGGSSNPTINS EGNRYV |
Full Sequence |
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Protein Sequence Length: 407 Download |
MSLLLGFGLF ADCSSSVVDD PAGQIGSIGN NCSERETTRK LLLQVLRPSC RKTGNSIDDC 60 WRCDPNWFNN RKRLADCAIG FGKDAKGGRD GHIYVVTDSS DNDVVNPRPS TLRYAVIQTE 120 PLWIIFARDM QITLKQELIM NSFKTIDGRG VKVEIAYGGQ ITVQYVTNII IHGLHIHHCK 180 ELRNAMVRDS PSHYGWRAKS DGDGISIFGA KHIWIDHNSL SNCTDGLVDA VEASTAITIS 240 NNLFMDHDKV MLLGAQDGYT QDKVMQVTIV YNRFGPGVEQ RMPHARYGNF HIVNNDYANG 300 WKIYAVGGSS NPTINSEGNR YVADPVKYPY AKEVTQRMKA SESEWKKWNW RSKGDQVLNG 360 AYFIPSGDAS PAAYVQASSA LPKPASMVLA MTANAGALTC LRGHVC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-26 | 142 | 319 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-67 | 135 | 321 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-70 | 129 | 323 | 206 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 135 | 323 | 61 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 148 | 297 | 140 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000001 | 169 | 397 | 105 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |