y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G148800.1 |
Family | PL1 |
Protein Properties | Length: 442 Molecular Weight: 49537.5 Isoelectric Point: 9.8055 |
Chromosome | Chromosome/Scaffold: 08 Start: 10034377 End: 10036125 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 153 | 359 | 0 |
IQKEPLWIIFSGSMVIRLNQELMVASNKTIDSRGAKVHIAYGAGITLQFVQNVIIHGLRIHDIVIGSGGLVRDSVDHYGFRTKSDGDGISIFGSSNIWID HVSMSNCQDGLIDVIMGSNAITISNSHFTRHNEVMLFGASDSYSGDSIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWMMYAIGGSHNPTIVSQ GNRFIAP |
Full Sequence |
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Protein Sequence Length: 442 Download |
MRTLNGHFLF FSLFVSLAAF VPTLQGHIGE FDEYWKKKAD EALKAAQEAF YPDPMNVTNQ 60 FNFQVNKVMT ETNSTRRSLV SKRGGRCMAT NPIDRCWRCD PNWASHRQKL ADCVLGFGHK 120 TVGGKYGKIY VVTDASDNDM LNPKPGTLRH AVIQKEPLWI IFSGSMVIRL NQELMVASNK 180 TIDSRGAKVH IAYGAGITLQ FVQNVIIHGL RIHDIVIGSG GLVRDSVDHY GFRTKSDGDG 240 ISIFGSSNIW IDHVSMSNCQ DGLIDVIMGS NAITISNSHF TRHNEVMLFG ASDSYSGDSI 300 MQITVAFNHF GRGLVQRMPR CRWGFFHVVN NDYTHWMMYA IGGSHNPTIV SQGNRFIAPN 360 NTFAKEVTKR DYAVESEWKN WNWRSDNDLM MNGAFFVQSG SPITSSRRIS RFHVMKSKPG 420 TFVTRLTRFS GSLGCFKGKP C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-20 | 27 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 5.0e-25 | 121 | 356 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-56 | 172 | 356 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-68 | 166 | 360 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 20 | 441 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 20 | 441 | 49 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 18 | 441 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 13 | 441 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 441 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 431 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 431 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 121 | 347 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 174 | 356 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000002 | 118 | 360 | 16 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |