y
Basic Information | |
---|---|
Species | Arabidopsis thaliana |
Cazyme ID | AT3G07010.1 |
Family | PL1 |
Protein Properties | Length: 417 Molecular Weight: 46174.2 Isoelectric Point: 8.4165 |
Chromosome | Chromosome/Scaffold: 3 Start: 2212728 End: 2216483 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 130 | 335 | 0 |
IQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHDCKPTGNAMVRSSPSHYGFRSMADGDAISIFGSSHIWID HNSLSNCADGLVDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQ GNRFLA |
Full Sequence |
---|
Protein Sequence Length: 417 Download |
MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG 60 YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG GRDGRFYVVT DPGDDDPVNP 120 IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT 180 NIIVHGIHVH DCKPTGNAMV RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL 240 VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH 300 GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW 360 RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT MTSYSGALNC RAGRRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 155 | 333 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-70 | 148 | 333 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-80 | 142 | 336 | 206 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61584.1 | 0 | 1 | 416 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAM63307.1 | 0 | 1 | 416 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
GenBank | AAX88800.1 | 0 | 1 | 416 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
RefSeq | NP_187357.1 | 0 | 1 | 416 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_568705.1 | 0 | 1 | 416 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 68 | 408 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 68 | 408 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 137 | 335 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 158 | 333 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000006 | 158 | 310 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |