y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G238800.1 |
Family | PL1 |
Protein Properties | Length: 443 Molecular Weight: 49195.4 Isoelectric Point: 7.1484 |
Chromosome | Chromosome/Scaffold: 02 Start: 23182065 End: 23187389 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 156 | 361 | 0 |
IQDEPLWIVFKRDMVITLKQELIMNSFKTIDARGTNVHIANGACITIQFITNVIIHGLHVHDCKPTGNAMVRSSPSHYGWRTIADGDGISIFGSSHIWID HNSLSNCADGLIDAIIGSTAITISNNYFTHHNEVMLLGHSDSYQRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 443 Download |
MEVSLRSFCV RTMLVLVVLI SVNAAEEKDE QKLRLKETQE LLSSKNSSMA DWYDDAWNEH 60 TMEDPEEVAA MVDESIRNST ERRKLGFFSC VTGNPIDDCW RCDPHWQLHR KRLANCGIGF 120 GRNAVGGRDG RFYVVSNPGD DDPVNPKPGT LRHAVIQDEP LWIVFKRDMV ITLKQELIMN 180 SFKTIDARGT NVHIANGACI TIQFITNVII HGLHVHDCKP TGNAMVRSSP SHYGWRTIAD 240 GDGISIFGSS HIWIDHNSLS NCADGLIDAI IGSTAITISN NYFTHHNEVM LLGHSDSYQR 300 DKQMQVTIAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWE MYAIGGSADP TINSQGNRYL 360 APANAFAKEV TKRVETNAGV WKHWNWRSEG DLLLNGAYFT ASGAGAAASY ARASSLGAKS 420 SSMVGDITSN AGALSCRRGR RC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.008 | 188 | 289 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 3.0e-27 | 181 | 357 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-71 | 174 | 359 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-80 | 168 | 362 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN75298.1 | 0 | 1 | 442 | 1 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 1 | 442 | 1 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301766.1 | 0 | 53 | 442 | 3 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321242.1 | 0 | 54 | 442 | 3 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 4 | 442 | 6 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 94 | 435 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 94 | 435 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 163 | 361 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 242 | 336 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000002 | 184 | 433 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |