y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_022024m |
Family | PL1 |
Protein Properties | Length: 434 Molecular Weight: 48799.8 Isoelectric Point: 9.0756 |
Chromosome | Chromosome/Scaffold: 02003 Start: 13027 End: 15644 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 152 | 351 | 0 |
WITFAKDMNIKLSQELIMNSNKTIDGRGHKVHIAYGAGITIQFVSNVIIHGIRIHHICAKGGGMIRDSPDHYGLRTQSDGDGITIFGSSNVWIDHVSMSK CGDGLIDAVQGSTAVTISNCLFTRHNDVMLLGASDSFAGDQFMQVTVAFNRFGQGLLQRMPRCRWGFFHVVNNDYTYWKMYAIGGSKHPTIISQGNRFLA |
Full Sequence |
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Protein Sequence Length: 434 Download |
MAMAAKLVLI FVFCFAAIIP LLEANSGYDE DGVWKKRKEE AKKSMMESYV PDPLVVTDEF 60 DVQINHSRRS LRKKRYTGPC HTTNPIDACW RCRPDWESRR KSLGRCALGF GRRTNGGMAG 120 KIYVVTDNND DDLLEPKPGT LRYGVIQKEP LWITFAKDMN IKLSQELIMN SNKTIDGRGH 180 KVHIAYGAGI TIQFVSNVII HGIRIHHICA KGGGMIRDSP DHYGLRTQSD GDGITIFGSS 240 NVWIDHVSMS KCGDGLIDAV QGSTAVTISN CLFTRHNDVM LLGASDSFAG DQFMQVTVAF 300 NRFGQGLLQR MPRCRWGFFH VVNNDYTYWK MYAIGGSKHP TIISQGNRFL APDDIHLKSV 360 TKRDYAPESE WRNWVWRSEG DLFMNGAFFT QSGQQNMKAR PSHEYMIQAN PGEFAARMTR 420 YAGALECVRG KKC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.001 | 170 | 274 | 106 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
pfam04431 | Pec_lyase_N | 6.0e-8 | 28 | 71 | 52 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-30 | 114 | 424 | 334 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 148 | 349 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-80 | 158 | 353 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002306040.1 | 0 | 5 | 433 | 4 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 15 | 433 | 5 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 31 | 433 | 29 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 433 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 433 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 84 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 84 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000006 | 165 | 351 | 62 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000009 | 167 | 349 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000003 | 162 | 423 | 71 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |