y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 355442 |
Family | PL1 |
Protein Properties | Length: 485 Molecular Weight: 53548.8 Isoelectric Point: 8.6165 |
Chromosome | Chromosome/Scaffold: 7 Start: 14696650 End: 14700087 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 198 | 403 | 0 |
IQEEPLWIVFKRDMVIELKQELIMNSFKTIDGRGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWID HNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYAA |
Full Sequence |
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Protein Sequence Length: 485 Download |
MASSSQKLIS VCVALLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AATRFRNNTL 60 LFPVFGFTRK LKTEEFQSLN SSTMAATRLD GEPQQQHAVA ADPDMVADEV AKLVQMSEQN 120 RTARRKLGFF SCGTGNPIDD CWRCDRNWHK NRKRLADCGI GFGRNAIGGR DGRFYVVTDP 180 TDEDVVNPKP GTLRHAVIQE EPLWIVFKRD MVIELKQELI MNSFKTIDGR GSNVHIANGA 240 CITIQFITNV IIHGLHIHDC KPTGNAMVRS SPSHFGWRTM ADGDAVSIFG SSHIWIDHNS 300 LSHCADGLVD AVMGSTAITV SNNHFTHHNE VMLLGHSDSY TKDKLMQVTI AYNHFGEGLV 360 QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA EPTINSQGNR YAAPMDRFAK EVTKRVETDA 420 SEWKKWNWRS EGDLLLNGAF FRPSGAGASA SYGRASSLAA KPSSMVDTIT STAGALGCRK 480 GRPC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 223 | 399 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-72 | 216 | 401 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-83 | 210 | 404 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 117 | 484 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
DDBJ | BAF43573.1 | 0 | 69 | 484 | 14 | 425 | pectate lyase [Prunus persica] |
EMBL | CAB36835.1 | 0 | 117 | 484 | 7 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
RefSeq | NP_567409.1 | 0 | 1 | 484 | 1 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002297822.1 | 0 | 64 | 484 | 33 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 136 | 476 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 136 | 476 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 205 | 392 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 219 | 406 | 128 | 335 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000009 | 216 | 401 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |