y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10022310 |
Family | PL1 |
Protein Properties | Length: 410 Molecular Weight: 45445.9 Isoelectric Point: 7.4712 |
Chromosome | Chromosome/Scaffold: 225 Start: 655826 End: 657055 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 117 | 323 | 0 |
VIQDEPLWIVFQRDMVITLKQELVMNSFKTIDGRGASVHVAGGPCITIHHTTNIIIHGINIHDCKQGGNANIRDSPRHYGWWTPSDGDGISVFASRNIWI DHCTMSNCRDGLIDVIHGSTAVTISNNHFTHHDKVMLLGHQDSYTEDKNMQVTVAFNHFGEGLVQRMPRCRNGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRFLA |
Full Sequence |
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Protein Sequence Length: 410 Download |
MASLPLLILA LFFFSSLYPH LSSASVQDPD LVVEDFHRAM NESRRKLSYL SCGTGNPIDD 60 CWRCNPNWST NRQRLADCAI GFGKNALGGR DGRIYVVTDP KDDDPVNPRP GTLRHAVIQD 120 EPLWIVFQRD MVITLKQELV MNSFKTIDGR GASVHVAGGP CITIHHTTNI IIHGINIHDC 180 KQGGNANIRD SPRHYGWWTP SDGDGISVFA SRNIWIDHCT MSNCRDGLID VIHGSTAVTI 240 SNNHFTHHDK VMLLGHQDSY TEDKNMQVTV AFNHFGEGLV QRMPRCRNGY FHVVNNDYTH 300 WEMYAIGGSA SPTINSQGNR FLAPYDRSKK EVTKHEDAPE SEWRNWNWRS EGDLLLNGAF 360 FRQSGAGAGG SSHFGTYARA SSLSARPASF VAAMTTTAGA LSCRRGSHC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.007 | 201 | 251 | 51 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 7.0e-27 | 181 | 321 | 154 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-66 | 136 | 321 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-70 | 130 | 324 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 22 | 409 | 16 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
GenBank | ADB90475.1 | 0 | 27 | 409 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
RefSeq | XP_002268976.1 | 0 | 22 | 409 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 6 | 409 | 4 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 3 | 409 | 2 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 402 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 402 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-20 | 125 | 323 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000006 | 128 | 334 | 122 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000001 | 146 | 298 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |