y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT4G22090.1 |
Family | PL1 |
Protein Properties | Length: 395 Molecular Weight: 43299.1 Isoelectric Point: 8.3834 |
Chromosome | Chromosome/Scaffold: 4 Start: 11704003 End: 11706042 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 107 | 314 | 0 |
VIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTNVIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIFGSSNVWI DHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFS EGNYFIAS |
Full Sequence |
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Protein Sequence Length: 395 Download |
MTHFTVSCLL VALFLCQSLV HAAYNGYYGY SPAAAPYPAE EPQNIMNPVD SCWRLKSDWD 60 VNREDLADCA VGFGSSTLGG KKGNIYVVTN PYDNAQNPHP GSLRYGVIQA KPLWITFAKD 120 MVITLANELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKSGKVRS 180 SPTHVGHRKG SDGDAITIFG SSNVWIDHCY LASCTDGLID VIHASTAITI SNNYFTQHDK 240 VMLLGHNDNF VKDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA 300 DPTIFSEGNY FIASDKSYSK EVTKREVKGG WNNWRWRTSN DVFKNGAFFV PSGYGSIPLP 360 YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-28 | 71 | 311 | 262 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-61 | 126 | 311 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-78 | 120 | 315 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 4 | 393 | 6 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 1 | 394 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193940.1 | 0 | 1 | 394 | 1 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 4 | 393 | 6 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002518442.1 | 0 | 30 | 393 | 28 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 47 | 383 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 66 | 313 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000004 | 129 | 311 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.0000000000001 | 72 | 320 | 22 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |