y
Basic Information | |
---|---|
Species | Arabidopsis thaliana |
Cazyme ID | AT3G27400.1 |
Family | PL1 |
Protein Properties | Length: 413 Molecular Weight: 45984.7 Isoelectric Point: 7.946 |
Chromosome | Chromosome/Scaffold: 3 Start: 10140323 End: 10143225 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 133 | 331 | 0 |
IIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFGGKHVWIDHCSLSNC DDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA |
Full Sequence |
---|
Protein Sequence Length: 413 Download |
MVSYSNNHFA YAFLLLLTIG NTLAFSSSLP DHVQDPNLVV DDVNRSVFNA SRRSLAYLSC 60 RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRKG RIYVVTDPAN DDPVNPRPGT 120 LRYAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCL KIHYATNIII 180 HGINIHDCKP GSGGMIKDGP HHTGWWMQSD GDAVAIFGGK HVWIDHCSLS NCDDGLIDAI 240 HGSTAITISN NHMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH 300 VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESK WRDWNWRSEG 360 DMLLNGAYFR ESGAEAPSTY ARASSLSARP SSLVGSITTT AGTLSCRRGR RC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-29 | 89 | 329 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-73 | 144 | 329 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-82 | 138 | 333 | 207 | + Amb_all domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189376.1 | 0 | 1 | 412 | 1 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | Q9LTZ0 | 0 | 3 | 412 | 8 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
RefSeq | XP_002300069.1 | 0 | 23 | 412 | 19 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 22 | 412 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 13 | 412 | 11 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 121 | 331 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 5e-16 | 142 | 403 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 5e-16 | 142 | 403 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |