y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g08035.1 |
Family | PL1 |
Protein Properties | Length: 421 Molecular Weight: 46377.7 Isoelectric Point: 8.9362 |
Chromosome | Chromosome/Scaffold: 3 Start: 6228314 End: 6229796 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 141 | 339 | 0 |
IIFAKNMVITLTQELIINSDTTIDGRGAQVHIAKGAGLTVQNRSNVIIHNLHVHDIKHTDGGMVRDSPDHIGYRTRADGDGISLFTATNVWIDHISTSMC EDGLVDIVQSSTAITISNCHLTSHNDVMLFGASDSYPDDKIMQVTVAFTHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSSNPTIISQGNRYIA |
Full Sequence |
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Protein Sequence Length: 421 Download |
MDRSLQWRRR PASLLFVAVA FLAAAASAAA ADNYDAKARA LAAYHPDPIA VANSFNRAGK 60 KKQSNGPCEA TNPIDRCWRC RKDWATDRMR LARCAKGFGQ NTTGGLGGQI YIVTDPTDAD 120 VQNPRPGTIR FGVIQPQPIW IIFAKNMVIT LTQELIINSD TTIDGRGAQV HIAKGAGLTV 180 QNRSNVIIHN LHVHDIKHTD GGMVRDSPDH IGYRTRADGD GISLFTATNV WIDHISTSMC 240 EDGLVDIVQS STAITISNCH LTSHNDVMLF GASDSYPDDK IMQVTVAFTH FGRGLVQRMP 300 RCRWGFFHVV NNDYTHWLMY AIGGSSNPTI ISQGNRYIAP PNKAAKKITK RDYAPESEWK 360 NWVWHSEDDL LMNEAVFDPT GGAVTYKFDS TKLIKPKPGT YVTRLVRYAG TLACKPGCPC 420 * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-27 | 154 | 335 | 194 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-67 | 152 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-76 | 146 | 341 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 36 | 420 | 47 | 444 | unknown [Zea mays] |
GenBank | EAY85003.1 | 0 | 44 | 420 | 55 | 439 | hypothetical protein OsI_06363 [Oryza sativa Indica Group] |
RefSeq | NP_001046281.1 | 0 | 44 | 420 | 55 | 446 | Os02g0214400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437204.1 | 0 | 2 | 420 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 36 | 420 | 48 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-21 | 100 | 328 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000004 | 155 | 337 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000004 | 153 | 337 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |