y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.G02748.1 |
Family | PL1 |
Protein Properties | Length: 492 Molecular Weight: 52891.3 Isoelectric Point: 5.9824 |
Chromosome | Chromosome/Scaffold: 7 Start: 45531699 End: 45538017 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 135 | 333 | 0 |
IIFSADMMIRLKHELILNSFKTIDGRGHNIEITGNGCLTVQDVSNIIIHNIHVHDCKPSGNTNIRSSPTHVGFRGRSDGDGISIFGASHIWVDHCSLWHC KDGLIDAIMGSTAITISNSYFAHHNEVMLLGHKDSNAPDSGMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 492 Download |
MLFPTTCILP AWIVLVSLTL SAALNLTLPH QHPDPEAVVQ DVHRRLNASL SRRLLSSSSS 60 SCGTGNPIDD CWRCDPNWAS NRQRLADCGI GFGQSALGGR DGRIYVVTDS SDSDVVDPKP 120 GTLRYGVLQE EPLWIIFSAD MMIRLKHELI LNSFKTIDGR GHNIEITGNG CLTVQDVSNI 180 IIHNIHVHDC KPSGNTNIRS SPTHVGFRGR SDGDGISIFG ASHIWVDHCS LWHCKDGLID 240 AIMGSTAITI SNSYFAHHNE VMLLGHKDSN APDSGMQVTI AFNHFGEGLV QRMPRCRRGY 300 IHVVNNDFTE WQMYAIGGSA NPTINSQGNR YTAPVDADAK QVTKRVDTEE TEWTDWNWRT 360 EGDIMVNGAY FVPSGVGLSA QYSKASSLEP KSAGLIDQLT LNAGVFGDPR DTSGISNPGF 420 SGAGTTTATT ADGGGGNGSN GDSDYFGMIF GSDGPPAHSS ATSILLSLPI ILVLYTITNH 480 GALLSLQLLT L* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-22 | 153 | 329 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-57 | 146 | 331 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-66 | 140 | 334 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 23 | 474 | 22 | 492 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 6 | 480 | 15 | 515 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 2 | 452 | 1 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 7 | 410 | 12 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 3 | 457 | 4 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 66 | 405 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 66 | 405 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 135 | 331 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 156 | 344 | 135 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000001 | 156 | 308 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |