y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g038490.1 |
Family | PL1 |
Protein Properties | Length: 450 Molecular Weight: 49924 Isoelectric Point: 9.6289 |
Chromosome | Chromosome/Scaffold: 5 Start: 16484216 End: 16486299 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 169 | 368 | 0 |
ITFARSMTIRLNQELIMTSHKTIDGRGADVTIASGAGITIQFIENVIIHGIKIFDIVVGSGGLIRDGQDHFGQRTMSDGDGISIFGSSNIWIDHVSMRNC RDGLVDAIMGSTAITISNSHFTDHNEVMLFGASDGYGGDEKMQITVAFNHFGKRLIQRMPRCRFGFIHVLNNDYTHWEMYAIGGSMHPTIISEGNRFIAP |
Full Sequence |
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Protein Sequence Length: 450 Download |
MAKLYPIFLL TCLVVTISTL VHANVKEDKA YWDRIAPVLN TTYWQQKASA AAMKNDKAYT 60 PDPYAVSGNL SHSVSEMIIG NQGRRNLAGG KARGPCMATN PIDRCWRCDP NWANNRQKLA 120 DCVKGFGRKT TGGKGGPIYV VTDPSDSDMV NPRPGTLRFG VTRNGPLWIT FARSMTIRLN 180 QELIMTSHKT IDGRGADVTI ASGAGITIQF IENVIIHGIK IFDIVVGSGG LIRDGQDHFG 240 QRTMSDGDGI SIFGSSNIWI DHVSMRNCRD GLVDAIMGST AITISNSHFT DHNEVMLFGA 300 SDGYGGDEKM QITVAFNHFG KRLIQRMPRC RFGFIHVLNN DYTHWEMYAI GGSMHPTIIS 360 EGNRFIAPNN GHAKEITKRE YVDESVWKSW QWRSINDVYL NGAFFRQGGP ELKDRPFSRK 420 DMIKSRPGTY VGRLTRYSGS LRCIVGKPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.0002 | 43 | 87 | 47 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 8.0e-26 | 187 | 365 | 190 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-54 | 181 | 365 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-68 | 175 | 369 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 44 | 449 | 35 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 44 | 449 | 64 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 43 | 449 | 22 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 43 | 449 | 32 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 449 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 100 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 100 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-21 | 130 | 366 | 21 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 6e-17 | 165 | 365 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000002 | 172 | 342 | 130 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |