y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10002862m |
Family | PL1 |
Protein Properties | Length: 513 Molecular Weight: 58636.1 Isoelectric Point: 7.9076 |
Chromosome | Chromosome/Scaffold: 6 Start: 4940837 End: 4942664 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 224 | 429 | 0 |
IQKEPLWIIFKNDMHIRLSQELLINSHKTIDARGADVHIAHGAGITMQFVRNVIIHGLHIHHIFESSGGMIRDSVDHFGMRTRADGDGISIYGSSKIWLD HISMSKCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNTNEADKHMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSH GNRFIA |
Full Sequence |
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Protein Sequence Length: 513 Download |
MEMARLLKLM FMFCIAGLIP TIRGNISELD EYWSKRADAA REFTLKAYHS DPYEVVDHFH 60 ERHYDNSTDV TEIEEDGSAK PEEGNLEEHK EENIEENQEE NIEENKEGNK EGNIEENKEE 120 EEDEQKEGIE MLGSSTNSTR RSLRGKGKGK WSKLRGPCTA SNPIDKCWRC RSDWAKRRKK 180 LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMHIR 240 LSQELLINSH KTIDARGADV HIAHGAGITM QFVRNVIIHG LHIHHIFESS GGMIRDSVDH 300 FGMRTRADGD GISIYGSSKI WLDHISMSKC QDGLIDAIVG STAITISNSH FTHHNDVMLL 360 GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI 420 LSHGNRFIAP PHKPHYREVT KRDYASEDEW KHWNWRSEKD VFMNGAYFRQ SGDPKYKCAH 480 TRQQMIKPKH GLAVSKLTKY AGALDCRVGK RC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-17 | 25 | 71 | 47 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-27 | 192 | 427 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-63 | 243 | 427 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-73 | 236 | 431 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 1 | 512 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | ABK28696.1 | 0 | 1 | 512 | 1 | 472 | unknown [Arabidopsis thaliana] |
RefSeq | NP_186776.1 | 0 | 1 | 512 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_197015.4 | 0 | 1 | 512 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9LFP5 | 0 | 1 | 512 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 162 | 504 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 162 | 504 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 231 | 429 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 245 | 427 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000003 | 243 | 427 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |