y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02252.1 |
Family | PL1 |
Protein Properties | Length: 537 Molecular Weight: 57700.5 Isoelectric Point: 6.1885 |
Chromosome | Chromosome/Scaffold: 3 Start: 41649331 End: 41652772 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 144 | 345 | 0 |
PLWIIFSGNMVIKLRYELLISSFKTIDGRGANVHITGLGCLIIYDVTNIIIHNVHIHHCKPSGNAKIRISPTQVTERGRSDGDGISVLASSKIWIDHCFL SYCTDGLIDVTEGSTAVTLSNNMFAHHDKVMLLGHSDDFTADSGMQVTVAFNHFGDDLKERMPRCRFGYFHVVNNDYTQWGMYAVGGSSHPTINSQGNRY LA |
Full Sequence |
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Protein Sequence Length: 537 Download |
MLRITWSCIV LVCCSFTLHA LNLNATSSSS SSSKILVHPH QHPDPQAVVH DVNRRVNESV 60 TRRQLLVVQV RDQCLTGNPI DDCWRCDPNW ELNREHLADC AIGFGREALG GRGGNVYVVT 120 DPSDPDPENP PPGTLRYGVV QAGPLWIIFS GNMVIKLRYE LLISSFKTID GRGANVHITG 180 LGCLIIYDVT NIIIHNVHIH HCKPSGNAKI RISPTQVTER GRSDGDGISV LASSKIWIDH 240 CFLSYCTDGL IDVTEGSTAV TLSNNMFAHH DKVMLLGHSD DFTADSGMQV TVAFNHFGDD 300 LKERMPRCRF GYFHVVNNDY TQWGMYAVGG SSHPTINSQG NRYLAPQDNN NKEVTKRMDT 360 DESEWRKWNW RSEGDLMVNG AFFVTSGADM SPQYAEASSM SPLSASYIDQ LTATAGVLVE 420 QRSDAGTVTN PSSGGGIVTN PAAPGSSGGG VVTNPAAPGS SGGTVTNPVS SGGDGSSGYP 480 GQGSTGTITG TSCWYTDNGI DYGSIYNSEA RTPLVPMTSV ILSVIAIVAF LHRTCS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-22 | 160 | 329 | 180 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-58 | 159 | 343 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-61 | 152 | 346 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 8 | 439 | 18 | 459 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 41 | 418 | 145 | 525 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 36 | 431 | 28 | 425 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 7 | 422 | 5 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 431 | 1 | 425 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 78 | 418 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 78 | 418 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-20 | 143 | 344 | 46 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 8e-17 | 156 | 320 | 71 | 246 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 2e-16 | 156 | 320 | 123 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |