y
Basic Information | |
---|---|
Species | Mimulus guttatus |
Cazyme ID | mgv1a007737m |
Family | PL1 |
Protein Properties | Length: 397 Molecular Weight: 43271.7 Isoelectric Point: 8.4579 |
Chromosome | Chromosome/Scaffold: 24 Start: 1821373 End: 1823200 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 116 | 316 | 0 |
WITFQGDMSITLENELMVNSYKTIDGRGARVEISNGPCISIDGVNHVIIHGISIHDCKPGRPGMVRSSPDHVGHRLGCDGDAISIFSSSNVWVDHCYLAR AADGLVDVTHGSNFVTVSNNYFTQHDKVMLLGHNDAFTADKSMKVTVVFNHFGPRLVQRLPRVRHGYAHVANNKYDQWLMYAIGGSADPTILSENNYFLA S |
Full Sequence |
---|
Protein Sequence Length: 397 Download |
MAINNPSSLF ILSWLLAYCI LTYSANASSK TSNKTSTTTY PRSSSKLMNQ IDSCWRSNPN 60 WASNRQALAD CAIGFGSSAT GGKYGPIYIV TDPSDDPINP KPGTLRYGAI QTQPLWITFQ 120 GDMSITLENE LMVNSYKTID GRGARVEISN GPCISIDGVN HVIIHGISIH DCKPGRPGMV 180 RSSPDHVGHR LGCDGDAISI FSSSNVWVDH CYLARAADGL VDVTHGSNFV TVSNNYFTQH 240 DKVMLLGHND AFTADKSMKV TVVFNHFGPR LVQRLPRVRH GYAHVANNKY DQWLMYAIGG 300 SADPTILSEN NYFLASNDAT AKQVTKRETT PNGWKSWKWR STGDIFLNGA YFVPSGYGST 360 APNYLKSQSF VAASASFVPA LTSDAGPLFC LPRQQC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-28 | 130 | 313 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-64 | 112 | 313 | 211 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-73 | 122 | 317 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 9 | 396 | 7 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 34 | 396 | 31 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 9 | 396 | 7 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 41 | 396 | 23 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 34 | 396 | 29 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 386 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 386 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pcl_A | 5e-19 | 130 | 317 | 75 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1jta_A | 3e-18 | 138 | 327 | 90 | 303 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1jrg_B | 3e-18 | 138 | 327 | 90 | 303 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |