y
Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa003600m |
Family | PL1 |
Protein Properties | Length: 564 Molecular Weight: 61194.3 Isoelectric Point: 6.8482 |
Chromosome | Chromosome/Scaffold: 2 Start: 20475544 End: 20481184 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 195 | 402 | 0 |
AVIQTEPLWIIFSADMTIKLKCELIVNSFKTIDGRGFNVHVTGGGCITLQYVSNIIIHNIHVHHCKPAGNTNVASSPTHVGWRGKSDGDGISLFGARKIW IDHCSLSYCADGLIDAIMGSTGITISNSYFAHHDEVMLLGHDDKYLPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSANPTIN SQGNRYTA |
Full Sequence |
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Protein Sequence Length: 564 Download |
MEGRGLLASQ VVVCCYYWAA LERKISIKEE SFMQKRKNTT AANNKQIPFG PPSLLFFLSS 60 LLSRMLPTTC ILLICLLSSL SPLTKASSLN LTLPHQHPNP EAVAQEVQRR VNASLSRRQM 120 LSLELKEQQQ CLIGNPIDDC WRCDSNWARN RQKLADCGIG FGQDAMGGKG GQIYIVTDSS 180 DRDPANPVPG TLRHAVIQTE PLWIIFSADM TIKLKCELIV NSFKTIDGRG FNVHVTGGGC 240 ITLQYVSNII IHNIHVHHCK PAGNTNVASS PTHVGWRGKS DGDGISLFGA RKIWIDHCSL 300 SYCADGLIDA IMGSTGITIS NSYFAHHDEV MLLGHDDKYL PDSGMQVTIA FNHFGEALVQ 360 RMPRCRRGYI HVVNNDFTQW EMYAIGGSAN PTINSQGNRY TAPQDQNAKE VTKRVDTNEG 420 DWSDWNWRTD GDIMVNGAFF VPSGAGMSTQ YARASSTEPK SVALIDRLTN NAGVFGDPRS 480 STSVSHPGDD GGGTITDGTN TGSEGSSGGD GDYFGMIFGN GAPPSSSSSS NTIFLSLLII 540 FILYVTINHG GALLSLPLLL TLL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-23 | 167 | 398 | 249 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-57 | 217 | 400 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-67 | 209 | 403 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 70 | 549 | 18 | 514 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 65 | 524 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 66 | 479 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 90 | 476 | 25 | 411 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 66 | 525 | 4 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 135 | 474 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 135 | 474 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 154 | 400 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000008 | 213 | 473 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000008 | 213 | 473 | 78 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |