y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29629.m001376 |
Family | PL1 |
Protein Properties | Length: 399 Molecular Weight: 44491.2 Isoelectric Point: 5.1218 |
Chromosome | Chromosome/Scaffold: 29629 Start: 157380 End: 159150 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 118 | 316 | 0 |
IIFDHDMVIKLKEELLMNSYKTIDGRGYNIQIAEGPCITIQNVSSIIIHNIYIRDCIPAGNTVVRDSTKHAGMRGYSDGDGISIYAARDVWIDHCTLANC RDGLIDAVLGSTAITVSNNYMLHHNEVMLMGHSDDFLEDKNMQVTIAFNFFGDGLTQRMPRCRHGYFHIVNNIYTGWEMYAIGGSANPTINSQGNVFVA |
Full Sequence |
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Protein Sequence Length: 399 Download |
MSTFFLLSLA MISLVTSIYS KHLTKQISEA TEWSSRRSLL EKESCRFGNP IDDCWRCDSE 60 WETNRKMLAD CAIGFGRNAV GGRDGEFYVV TDSDNDDPVN PFPGTLRYGV IQEEPLWIIF 120 DHDMVIKLKE ELLMNSYKTI DGRGYNIQIA EGPCITIQNV SSIIIHNIYI RDCIPAGNTV 180 VRDSTKHAGM RGYSDGDGIS IYAARDVWID HCTLANCRDG LIDAVLGSTA ITVSNNYMLH 240 HNEVMLMGHS DDFLEDKNMQ VTIAFNFFGD GLTQRMPRCR HGYFHIVNNI YTGWEMYAIG 300 GSANPTINSQ GNVFVAKSTK EASLCVTKRE ISSGDEEWKS WNWRSDGDMM LNGAFFTPSG 360 EKGPASYMKA SSMVARPAAF LTDISPSAGA LDCQRGQQC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 125 | 314 | 205 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-65 | 129 | 314 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-73 | 123 | 316 | 205 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 361 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 361 | 2 | 314 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000001 | 68 | 316 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.0000000000002 | 127 | 360 | 78 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.0000000000002 | 127 | 360 | 78 | 325 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |