y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30078.m002258 |
Family | PL1 |
Protein Properties | Length: 483 Molecular Weight: 53152.7 Isoelectric Point: 5.6616 |
Chromosome | Chromosome/Scaffold: 30078 Start: 327824 End: 331999 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 139 | 338 | 0 |
IVFPSNMLIKLKEELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCVQSGDTNVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDEYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAP |
Full Sequence |
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Protein Sequence Length: 483 Download |
MLHISYIVLI LLLSSFSSFG LAMWNLTFPT PHPNPEQVVQ DVQRRVNASM SRRQMLQISQ 60 KDQTTCQTGN PIDDCWKCDP DWPNNRQRLA DCAIGFGQYA MGGKNGEYYI VTDSSDDDAV 120 NPKPGTLRYA VIQEEPLWIV FPSNMLIKLK EELIFNSYKT LDGRGANVHI VGGGCITLQY 180 ISNVIIHNIH IHHCVQSGDT NVRSSPTHYG YRTKSDGDGI SIFGSKDIWI DHCSLSHCKD 240 GLIDAVMGST GITISNNFFS HHNEVMLLGH SDEYLPDSGM QVTIAFNHFG EKLVQRMPRC 300 RRGYIHVVNN DFTQWEMYAI GGSGSPTINS QGNRYTAPSN PNAKEVTKRV DTAEGDWKGW 360 NWRSEGDIMV NGAFFIASGE ELEVKYEKAY SVEPKSAALI DLITMHAGVL GVGGRNNNLG 420 MWSTGANGGG ADQELGGSGD DYLDDYSGSS SPVSPPSAYA LVSFLTAFSC LISFQSIALT 480 SML 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-22 | 102 | 350 | 267 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-61 | 150 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-70 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 483 | 1 | 482 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 31 | 483 | 14 | 463 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 483 | 2 | 483 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 424 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 1 | 483 | 1 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 139 | 335 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 163 | 310 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000004 | 148 | 408 | 78 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |