y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G04310.1 |
Family | PL1 |
Protein Properties | Length: 519 Molecular Weight: 56040.9 Isoelectric Point: 7.2048 |
Chromosome | Chromosome/Scaffold: 5 Start: 1203203 End: 1207352 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 362 | 0 |
PLWIIFSSDMGIKLKHELIIGSYKTIDGRGTNIQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTHVGFRGVSDGDGISVSASHHIWVDHCSL GYCADGLIDVILASTAVTISNNYFSHHDEVMLLGHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTINSQGNRY TA |
Full Sequence |
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Protein Sequence Length: 519 Download |
MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV 60 QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC WRCDPNWSAN RQRLADCSIG 120 FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII 180 GSYKTIDGRG TNIQITGHGC LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS 240 DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT 300 ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY 360 TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF VPSGDGVSPA YARATSVQPK 420 AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL 480 FTLIFGNNSG AVALRPGQVW SILLIIILYW YIPHHTRS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-23 | 164 | 378 | 237 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-57 | 175 | 360 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-64 | 169 | 364 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0030570 | pectate lyase activity |
GO:0031225 | anchored to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24172.1 | 0 | 170 | 518 | 1 | 349 | putative pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_196051.2 | 0 | 1 | 518 | 1 | 518 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 42 | 493 | 26 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 13 | 438 | 2 | 414 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 16 | 487 | 8 | 458 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 434 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 434 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 114 | 360 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-17 | 178 | 380 | 128 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 5e-16 | 120 | 433 | 22 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |