y
Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_027215m |
Family | PL1 |
Protein Properties | Length: 406 Molecular Weight: 44884.6 Isoelectric Point: 7.5905 |
Chromosome | Chromosome/Scaffold: 11635 Start: 293467 End: 295045 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 119 | 324 | 0 |
IQDEPLWIIFKRDMVIKLKQELLVSSFKTIDGRGASVHISGGPCISIQYVSNIIIHGLHIHDCKEGGNAQIRVSPSHYGWRGKSDGDGITILASKHIWVD HCSLSNCYDGLIDATHGSTALTFSNNHFTHHDKVMLLGHSDSCTQDKDMRVTVAFNHFGEGLVQRMPRCRHGFFHVVNNDYTQWEMYAIGGSASPTIFSQ GNRFLA |
Full Sequence |
---|
Protein Sequence Length: 406 Download |
MSADSVSVLF LFFFTLLTPH LVISSPVPDH ELVVQEVQRS INVSRRNLAF LSCGTGNPID 60 DCWRCDPNWE RNRRRLADCA IGFGKDAIGG KDGRIYVVTD SSDDDAVNPK PGTLRHAVIQ 120 DEPLWIIFKR DMVIKLKQEL LVSSFKTIDG RGASVHISGG PCISIQYVSN IIIHGLHIHD 180 CKEGGNAQIR VSPSHYGWRG KSDGDGITIL ASKHIWVDHC SLSNCYDGLI DATHGSTALT 240 FSNNHFTHHD KVMLLGHSDS CTQDKDMRVT VAFNHFGEGL VQRMPRCRHG FFHVVNNDYT 300 QWEMYAIGGS ASPTIFSQGN RFLASDDNSK KEVTKHENAP ESEWSKWNWM SEGDLMENGA 360 FFRQTGAGAS ARYARASSLT ARPSSLVNSI TRTAGVLSCR KGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.002 | 151 | 252 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 6.0e-30 | 137 | 322 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-72 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-80 | 131 | 326 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76500.1 | 0 | 19 | 405 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 19 | 405 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 19 | 405 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 6 | 405 | 4 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 1 | 405 | 1 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 126 | 324 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 1e-16 | 135 | 395 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 1e-16 | 135 | 395 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |