y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G064700.1 |
Family | PL1 |
Protein Properties | Length: 436 Molecular Weight: 48512.2 Isoelectric Point: 9.6781 |
Chromosome | Chromosome/Scaffold: 15 Start: 8886714 End: 8888635 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 355 | 0 |
IIFAHDMVIRLSEELMVASNKTIDGRGVNVHIYNGAQITLQFVKNVIIHGIHIHDAKAGNGGMIRDSVDHYGFRSRSDGDGISIFGSTDIWIDHISLSNC EDGLIDAIMGSNAITISNCHFTKHNDVMLFGASDSYSGDSVMQITVAFNHFGRGLVQRMPRVRWGFVHVVNNDYTHWEMYAIGGSQHPTIISQGNRFVA |
Full Sequence |
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Protein Sequence Length: 436 Download |
MGAVKNYMLL VFFALAMQTS TLKAGIANFD EYWKKRAEEA KEASREAYEP NPAKVTKHFN 60 DEVHKSLEGG NSTRRNLGKN KGPCLATNPI DRCWRCDKNW AKNRKKLGGC ALGFGRKTIG 120 GKHGKYYRVT DPSDNDMVNP KAGTLRYGVI QDKPLWIIFA HDMVIRLSEE LMVASNKTID 180 GRGVNVHIYN GAQITLQFVK NVIIHGIHIH DAKAGNGGMI RDSVDHYGFR SRSDGDGISI 240 FGSTDIWIDH ISLSNCEDGL IDAIMGSNAI TISNCHFTKH NDVMLFGASD SYSGDSVMQI 300 TVAFNHFGRG LVQRMPRVRW GFVHVVNNDY THWEMYAIGG SQHPTIISQG NRFVAPPDPA 360 CKEVTKRDYA VESVWKSWNW RSEGDLMLNG AFFVQSGNAI KTMNKQAVIS AKPGRYVSRL 420 TRFSGALNCV RGRPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-5 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-28 | 170 | 353 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-65 | 175 | 353 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-77 | 162 | 357 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 435 | 23 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 16 | 435 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 11 | 435 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 435 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 7 | 435 | 9 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 88 | 427 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 88 | 427 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-18 | 157 | 344 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000006 | 169 | 354 | 74 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.000000000000008 | 173 | 365 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |