y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01020068001 |
Family | PL1 |
Protein Properties | Length: 444 Molecular Weight: 49927.8 Isoelectric Point: 9.7696 |
Chromosome | Chromosome/Scaffold: 1 Start: 10843187 End: 10845074 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 357 | 0 |
LWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYGAGITIQFVKNVIIHGLHIHDIVSGSGGLIRDSVNHFGYRSRSDGDGISIYGSSHVWIDHNSMS NCKDGLIDAIQGSTAITISNNHFTKHNEVMLFGASDSNSADEIMQITVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAIGGSAHPTIISQGNRYT A |
Full Sequence |
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Protein Sequence Length: 444 Download |
MAAVKSSSLL LLFFVLFAVI APTIRAHIAE YDDYWKEREE EAKKAALEAF HPTPQEVNDH 60 FNLHVEDELT GSNGTRRSLR VNKGPCKATN PIDRCWRCRP NWASQRKRLA DCVLGFGRNT 120 VGGKYGKYYF VTDPSDNDMV NPKKGTLRHA VIQPRPLWIV FARSMIIRLN QELIMTSDKT 180 IDGRGVNVHI AYGAGITIQF VKNVIIHGLH IHDIVSGSGG LIRDSVNHFG YRSRSDGDGI 240 SIYGSSHVWI DHNSMSNCKD GLIDAIQGST AITISNNHFT KHNEVMLFGA SDSNSADEIM 300 QITVAFNHFG RGLIQRMPRC RWGFFHVVNN DYTHWNMYAI GGSAHPTIIS QGNRYTAPHL 360 VDPKHDAKQV TKRDYAMESE WKKWTWRSEG DLMRNGAFFV PSGNPSKRMP YSRLDMIKAK 420 PGTYVSRLTR FSGALTCRRG GPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-13 | 27 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 8.0e-27 | 177 | 353 | 188 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-58 | 171 | 355 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-70 | 165 | 358 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69904.1 | 0 | 1 | 443 | 1 | 443 | hypothetical protein [Vitis vinifera] |
EMBL | CAN79927.1 | 0 | 1 | 443 | 1 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 1 | 443 | 30 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 1 | 443 | 1 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270112.1 | 0 | 1 | 443 | 1 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 90 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 90 | 436 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-21 | 118 | 346 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-18 | 177 | 377 | 132 | 352 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000006 | 168 | 373 | 71 | 296 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |