y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 333008 |
Family | PL1 |
Protein Properties | Length: 419 Molecular Weight: 46322.4 Isoelectric Point: 8.4106 |
Chromosome | Chromosome/Scaffold: 9 Start: 746926 End: 750216 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 136 | 337 | 0 |
PLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSL SNCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF LA |
Full Sequence |
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Protein Sequence Length: 419 Download |
MVIARTLFSI SATLIIILAL FFHVNSLSDG EWHEHAVKDP EEIAALVDMS IRNSTYRRKL 60 GFFSSCETGN PIDDCWRCDK KWHRRRKRLA GCAIGFGRNA VGGRDGRYYI VTDPSDHDPV 120 NPKPGTLRYA VIQDEPLWIV FKRDMVITLS QELIMNSFKT IDGRGVNVHI AGGACITIQY 180 VTNIIIHGIN IHDCKRTGNA MVRSSESHYG WRTMADGDGI SIFGSSHIWI DHNSLSNCAD 240 GLIDAIMGST AITISNNYLT HHNEAILLGH TDSYTRDKMM QVTIAYNHFG EGLVQRMPRC 300 RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFLAPGN RFAKEVTKRV GAGEGEWNNW 360 NWRSQGDLML NGAYFTSSGA GASANYARAS SLAAKSSSLV GMLTSSSGAF KCRIGTLC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.001 | 160 | 268 | 110 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 3.0e-24 | 157 | 335 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-66 | 151 | 335 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-76 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 408 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 408 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 139 | 344 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.00000000000006 | 160 | 347 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1vbl_A | 0.00000000000006 | 160 | 335 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |