y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T040400.1 |
Family | PL1 |
Protein Properties | Length: 377 Molecular Weight: 41284.1 Isoelectric Point: 9.8073 |
Chromosome | Chromosome/Scaffold: 38 Start: 345996 End: 347719 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 99 | 297 | 0 |
IVFAKDMVITLRNELIMNSYKTIDGRGAKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKSGRVISTPTHVGKRGGSDGDAIAIFASSNVWIDHCYLARC TDGLIDVIHASTSITISNNYFSQHDKVMLLGHNDGYTADKVMKVTIAFNRFGSGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFLA |
Full Sequence |
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Protein Sequence Length: 377 Download |
MSLASRPYAL DYKHYKPLSS YLPSNIKKTL NTIDSCWRAQ SNWANNRRAL ADCAVGFGRG 60 AMGGKYGAIY VVTTPNDDPV NPKPGMLRYG AIQSKPLWIV FAKDMVITLR NELIMNSYKT 120 IDGRGAKVEI AYGPCITIQG VSHVIIHGIS IHDCKPGKSG RVISTPTHVG KRGGSDGDAI 180 AIFASSNVWI DHCYLARCTD GLIDVIHAST SITISNNYFS QHDKVMLLGH NDGYTADKVM 240 KVTIAFNRFG SGLIERMPRV RFGYAHVANN RYDEWQMYAI GGSANPTIFS EGNYFLARNG 300 NSKQVTKREA KNGWTNWKWR SSKDVFMNGA YFVQSGYGSC APLYSKTQSF TVAPGSLVPA 360 LTSGAGPLNC FRGQPC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 178 | 295 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-59 | 112 | 295 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-71 | 104 | 297 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 9 | 376 | 26 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 376 | 17 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 9 | 376 | 25 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 11 | 376 | 24 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 5 | 376 | 21 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 31 | 366 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 31 | 366 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 49 | 296 | 1 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 123 | 295 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000001 | 110 | 299 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 353 | 29 | 377 | 0 |
FG606120 | 324 | 29 | 348 | 0 |
EL465440 | 301 | 43 | 339 | 0 |
CK262438 | 300 | 41 | 336 | 0 |
GT740031 | 307 | 40 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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