y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G007300.1 |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 43218.3 Isoelectric Point: 8.5099 |
Chromosome | Chromosome/Scaffold: 04 Start: 453964 End: 455518 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 114 | 312 | 0 |
IIFARDMVITLENELMINSYKTIDGRGANVEITGGPCLKIEYVSHVIIHGISIHDCKPGKRGLVRSSPTHVGERRGADGDAIAISASSNIWIDHCYLARC MDGLIDVIHATTAVTISNNYFTEHDKVMLLGHNDKYTEDQVMKVTVVFNHFGPKLNQRMPRVRFGYAHVANNRYDKWQMYAIGGSAGSTIFSEGNYFIA |
Full Sequence |
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Protein Sequence Length: 393 Download |
MASLAHVLLL SCLATFCAST LQGDSLNYKP KALSSYLPRN YKKVLNTIDS CWRTESDWAT 60 NRRALADCAV GFGQAAIGGK CGKTYVVTTP DDDPTNPKPG TLRYGAIRTE PLWIIFARDM 120 VITLENELMI NSYKTIDGRG ANVEITGGPC LKIEYVSHVI IHGISIHDCK PGKRGLVRSS 180 PTHVGERRGA DGDAIAISAS SNIWIDHCYL ARCMDGLIDV IHATTAVTIS NNYFTEHDKV 240 MLLGHNDKYT EDQVMKVTVV FNHFGPKLNQ RMPRVRFGYA HVANNRYDKW QMYAIGGSAG 300 STIFSEGNYF IAPDISYAKE VTKREVYGGW KNWKWRSSKD VFMNDAYFVQ SGYGRCAPRY 360 SKAQSFTVSP GAMAPALTSD AGPLSCVVGE AC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 202 | 310 | 120 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-51 | 127 | 310 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 119 | 314 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 392 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317132.1 | 0 | 1 | 392 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 392 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 18 | 392 | 3 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 1 | 392 | 1 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 46 | 382 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-20 | 64 | 312 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 3e-18 | 128 | 310 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000002 | 135 | 322 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |