y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a006496m |
Family | PL1 |
Protein Properties | Length: 443 Molecular Weight: 50116.1 Isoelectric Point: 9.1783 |
Chromosome | Chromosome/Scaffold: 66 Start: 357797 End: 359913 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 151 | 359 | 0 |
AVIQTEPLWIIFAHSMVIRLKQELIFTSDKTVDGRGVQVHIAYGAGLTLQFVHNVIIHNIWIHNIIPRNGGLIRDAINHLGFRTQSDGDAISIYSSNRIW IDHVSLSRATDGLIDIIEGSTAITISNCKLNHHNDVMLLGAHDAQSRDAIMQVTVAFNRFGIGLIQRMPRCRWGFFHVVNNDYQHWELYAIGGSAHPTII SQGNRFRAA |
Full Sequence |
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Protein Sequence Length: 443 Download |
MALTNNKLSL LFFCIALALA VTLPRAHAQN ATMDEYLQKK AEEAYQESLQ AYNPHPEELT 60 EEFNELVGET LIGQNATRRQ LKQTGECMAT NPIDRCWRCD RNWAKNRKKL ADCARGFGHQ 120 TTGGKKGRYY LVTDPSDNDM DHPKPGTLRH AVIQTEPLWI IFAHSMVIRL KQELIFTSDK 180 TVDGRGVQVH IAYGAGLTLQ FVHNVIIHNI WIHNIIPRNG GLIRDAINHL GFRTQSDGDA 240 ISIYSSNRIW IDHVSLSRAT DGLIDIIEGS TAITISNCKL NHHNDVMLLG AHDAQSRDAI 300 MQVTVAFNRF GIGLIQRMPR CRWGFFHVVN NDYQHWELYA IGGSAHPTII SQGNRFRAAD 360 YQYTKEVTKR DYATKDEWMK WQWRSEGDLF MNGAFFTESG PAIKHVRSPL NGRNMIKFKH 420 GSFVGRLTRS AGAIKCRPGK LC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-10 | 34 | 81 | 49 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 9.0e-24 | 219 | 357 | 162 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-56 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-63 | 166 | 360 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 442 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 20 | 442 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 17 | 442 | 3 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 442 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 9 | 442 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 160 | 347 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000004 | 178 | 356 | 132 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000002 | 169 | 356 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |