y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g132460.1 |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42665.9 Isoelectric Point: 9.4927 |
Chromosome | Chromosome/Scaffold: 4 Start: 46826987 End: 46828734 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 107 | 306 | 0 |
IIFERNMVLTLKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPDHVGRRRGADGDAISIFASSNIWIDHCFLARS TDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIVFNRFGSGLIERMPRVRFGYAHVVNNKYDQWQMYAIGGSANPTILSEGNFYNAP |
Full Sequence |
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Protein Sequence Length: 386 Download |
MAISTSLLLL SCFLLPIVLS FVNAYSKENY YNTNKPYLNK IDSCWRAKPN WALNRKALAD 60 CAIGFGKDSI GGKYGAIYIV TDSSDDPANP KPGTLRYGAI QTKPLWIIFE RNMVLTLKNE 120 LIMNSYKTID GRGVKVEIGN GPCITIQGVS HVIIHGISIH DCKPSKAGLV RSTPDHVGRR 180 RGADGDAISI FASSNIWIDH CFLARSTDGL IDIIHASTAI TISNNYFTQH DKVMLLGHND 240 EYTADKIMKV TIVFNRFGSG LIERMPRVRF GYAHVVNNKY DQWQMYAIGG SANPTILSEG 300 NFYNAPNDHT KKQITKRESK GNWKSWKWRS SKDYFSNGAY FIPSGYGSCA PNYTPAQSFV 360 AVPGYMVPAI TLNAGPLSCF VGRSC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-24 | 186 | 303 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-57 | 118 | 303 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 112 | 307 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 385 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 385 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 4 | 385 | 3 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 385 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 34 | 385 | 39 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 39 | 378 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 39 | 378 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-19 | 107 | 303 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000001 | 128 | 307 | 90 | 291 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000001 | 128 | 307 | 90 | 291 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |