y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g104320.1 |
Family | PL1 |
Protein Properties | Length: 408 Molecular Weight: 44360.8 Isoelectric Point: 6.9374 |
Chromosome | Chromosome/Scaffold: 4 Start: 36218766 End: 36221022 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 325 | 0 |
WIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVA |
Full Sequence |
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Protein Sequence Length: 408 Download |
MTTTTTSSLF FLLSLLTFSL ISSSPLQDPD LVTQEVNRKI NGSLARRNLG YLSCGSGNPI 60 DDCWRCDPNW EKNRQRLADC AIGFGKNAIG GKNGKIYVVT DSGDDDPVTP KPGTLRFAVI 120 QDEPLWIIFA RDMVIQLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NVIIHGIHIH 180 DCKQGGNAMV RDSPGHYGWR TVSDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTAI 240 TISNNYMTHH DKVMLLGHSD TYTQDKNMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SANPTINSQG NRFVAPDDRF SKEVTKHEDA PEGEWKGWNW RSEGDLLING 360 AFFTPSGAGG ASSSYARASS LSARPSSLVG TITTGAGVLG CKKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-75 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-83 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 17 | 407 | 23 | 413 | pectase lyase [Prunus persica] |
GenBank | ACU21247.1 | 0 | 1 | 407 | 1 | 406 | unknown [Glycine max] |
DDBJ | BAE48664.1 | 0 | 17 | 407 | 23 | 413 | Pectate lyase [Prunus mume] |
RefSeq | XP_002318694.1 | 0 | 17 | 407 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 17 | 407 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 77 | 324 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000000003 | 148 | 381 | 151 | 396 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1jta_A | 0.000000000000008 | 171 | 397 | 115 | 357 | A Chain A, Bacillus Subtilis Pectate Lyase |