y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G178100.2 |
Family | PL1 |
Protein Properties | Length: 390 Molecular Weight: 43607.3 Isoelectric Point: 6.8898 |
Chromosome | Chromosome/Scaffold: 14 Start: 14619696 End: 14624206 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 155 | 361 | 0 |
VIQDQPLWIVFKRDMVITLKQELILNSFKTIDARGTNVHIANGACITIQFVSNVIIHGLHIHDCKSTGNAMVRSSPSHYGWRTMADGDGISIFGASHIWI DHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYKRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRYLA |
Full Sequence |
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Protein Sequence Length: 390 Download |
MAVSLRCFCT WTLLVLVMFL SVNAAEEKDE LKLRLKETQE LLRSKNSSMA EWSDDAWNEH 60 TVEDSEEVAA MVDESIRNST ERRKLGFFSC VTGNPIDDCW RCDPHWQLHR KRLANCGIGF 120 GRNAVGGRDG KYYVVSNPGD DDPVNPRPGT LRHAVIQDQP LWIVFKRDMV ITLKQELILN 180 SFKTIDARGT NVHIANGACI TIQFVSNVII HGLHIHDCKS TGNAMVRSSP SHYGWRTMAD 240 GDGISIFGAS HIWIDHNSLS NCADGLIDAI MGSTAITISN NYFTHHNEVM LLGHSDSYKR 300 DKQMQVTIAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWE MYAIGGSANP TINSQGNRYL 360 APANAFAKEV TKRVDTETGL QPAMPGPQA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.006 | 190 | 283 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
pfam13229 | Beta_helix | 0.0005 | 188 | 289 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 4.0e-27 | 181 | 357 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-73 | 174 | 359 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-82 | 168 | 362 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 1 | 380 | 1 | 375 | ripening-related pectate lyase [Mangifera indica] |
RefSeq | XP_002265100.1 | 0 | 1 | 380 | 1 | 383 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301766.1 | 0 | 54 | 380 | 4 | 330 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321242.1 | 0 | 53 | 380 | 2 | 329 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 1 | 377 | 1 | 376 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 94 | 378 | 2 | 287 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 94 | 378 | 2 | 287 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 163 | 368 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000005 | 242 | 336 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000005 | 184 | 371 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |