y
Basic Information | |
---|---|
Species | Prunus persica |
Cazyme ID | ppa020682m |
Family | CE8 |
Protein Properties | Length: 313 Molecular Weight: 34866 Isoelectric Point: 7.9052 |
Chromosome | Chromosome/Scaffold: 1 Start: 567987 End: 570525 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 16 | 302 | 0 |
ITVDQSGHGNFTSIQSAIDAVPINNRNWVSIKIKAGTYKEKVIIPVDKPYIILKGENRHKTQIVWDDHDSVAQSPTFASYADSIIVKSISFVNSYNNPVN NKNPRVAAVAAMIYGDKSSFYRCGFFGLQDTLWDGQGRHYYHLCTIQGAVDFIFGSAQSIFQKCSIQVLGGALDPGSAGYITAQGRDNPNDASGFVFKDC KVSGTGSTFLGRAWRGYSRVIFYNSNFSQVVVPQGWDAWHFQGNEHQLTYAEHGCYGPGADTVKRVEWEKKLNADTVRELTSLNFID |
Full Sequence |
---|
Protein Sequence Length: 313 Download |
MYRVDSNNKK LAYYTITVDQ SGHGNFTSIQ SAIDAVPINN RNWVSIKIKA GTYKEKVIIP 60 VDKPYIILKG ENRHKTQIVW DDHDSVAQSP TFASYADSII VKSISFVNSY NNPVNNKNPR 120 VAAVAAMIYG DKSSFYRCGF FGLQDTLWDG QGRHYYHLCT IQGAVDFIFG SAQSIFQKCS 180 IQVLGGALDP GSAGYITAQG RDNPNDASGF VFKDCKVSGT GSTFLGRAWR GYSRVIFYNS 240 NFSQVVVPQG WDAWHFQGNE HQLTYAEHGC YGPGADTVKR VEWEKKLNAD TVRELTSLNF 300 IDTDGWLNDQ PF* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 3.0e-80 | 8 | 307 | 311 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 4.0e-86 | 15 | 307 | 294 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-87 | 16 | 307 | 292 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-105 | 5 | 311 | 308 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-168 | 9 | 311 | 306 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 5 | 311 | 34 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 16 | 311 | 34 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 11 | 311 | 27 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 16 | 311 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 6 | 312 | 38 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.00018e-42 | 16 | 312 | 9 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-37 | 18 | 283 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000003 | 12 | 229 | 29 | 269 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000001 | 26 | 279 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000001 | 26 | 279 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DV984237 | 293 | 25 | 309 | 0 |
EE476551 | 220 | 16 | 232 | 0 |
AW036464 | 210 | 76 | 284 | 0 |
EX315894 | 278 | 40 | 309 | 0 |
EX317112 | 275 | 43 | 309 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|