y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra009921 |
Family | CE8 |
Protein Properties | Length: 330 Molecular Weight: 36251.2 Isoelectric Point: 7.8015 |
Chromosome | Chromosome/Scaffold: 06 Start: 18093770 End: 18095580 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 34 | 318 | 0 |
IFVDLAGSGKHRTVQSAIDSVPEPNSQWIKIKIKGGVYVEKVEIPLTKPCIIVEGEGQRVTTITYNAHAATDVSSTFTSHPSHVVNSYNRLSIRSRPSWD IKPAVALTVYGDKSAFYNCGFLGLQDTLWDVQGRHLFKNCYIEGAIDFIFGSGQSIYEDCHINATAGVLAPIVNFGYITAQARWSLKDPSGFVFLRGSVT GTMNVYLGRAYGPFSRVIFFQTDLASVVVPQGWFPWNYAGHESRFTYAEVECKGAGSHLSRRVPWINKDVSTLAKDQFATYSFID |
Full Sequence |
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Protein Sequence Length: 330 Download |
MPGLFIFIAL LLSSCTGLST ATDQTCGNKV VNTIFVDLAG SGKHRTVQSA IDSVPEPNSQ 60 WIKIKIKGGV YVEKVEIPLT KPCIIVEGEG QRVTTITYNA HAATDVSSTF TSHPSHVVNS 120 YNRLSIRSRP SWDIKPAVAL TVYGDKSAFY NCGFLGLQDT LWDVQGRHLF KNCYIEGAID 180 FIFGSGQSIY EDCHINATAG VLAPIVNFGY ITAQARWSLK DPSGFVFLRG SVTGTMNVYL 240 GRAYGPFSRV IFFQTDLASV VVPQGWFPWN YAGHESRFTY AEVECKGAGS HLSRRVPWIN 300 KDVSTLAKDQ FATYSFIDQD GWLSNIPPF* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-76 | 34 | 323 | 290 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-77 | 31 | 328 | 306 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-79 | 33 | 323 | 297 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 6.0e-97 | 7 | 327 | 328 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-112 | 6 | 327 | 330 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB61046.1 | 0 | 1 | 329 | 1 | 244 | Similar to pectinesterase; F2P16.5 [Arabidopsis thaliana] |
RefSeq | NP_198033.2 | 0 | 1 | 329 | 1 | 293 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002318946.1 | 0 | 4 | 327 | 9 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 2 | 327 | 4 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 30 | 327 | 36 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8.00001e-41 | 34 | 323 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-25 | 30 | 298 | 1 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000002 | 46 | 295 | 46 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000003 | 32 | 245 | 5 | 240 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000003 | 32 | 245 | 5 | 240 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |