y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 489513 |
Family | CE8 |
Protein Properties | Length: 293 Molecular Weight: 32496.7 Isoelectric Point: 6.7763 |
Chromosome | Chromosome/Scaffold: 6 Start: 12281041 End: 12283163 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 42 | 282 | 0 |
GEGQRVTTIMYNGHEATDVSSTFTSYPPHIVVRNLSIMTYYPLNSLTMKANDMSWKIKPAVAISVYGDKSAFYNCDFVGLQDTVWDNHGKHHFKNCYIQG AIDFIFGSGQSIYEDCHINATAGALASEVAVGYITAQGRSSVSDPSGFVFLRGSVSGTTSVYLGRAYGPFSRVIFIQTDLSSVVHPKGWDPWHYGRYEMS FTYAEVECKGAGSDISGRVPWSDKLHSFYTKQQFSISNFID |
Full Sequence |
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Protein Sequence Length: 293 Download |
MSCLFIFIAL LLSFCLKSLT ALDQTCGNKV VNTIVVDQTG SGEGQRVTTI MYNGHEATDV 60 SSTFTSYPPH IVVRNLSIMT YYPLNSLTMK ANDMSWKIKP AVAISVYGDK SAFYNCDFVG 120 LQDTVWDNHG KHHFKNCYIQ GAIDFIFGSG QSIYEDCHIN ATAGALASEV AVGYITAQGR 180 SSVSDPSGFV FLRGSVSGTT SVYLGRAYGP FSRVIFIQTD LSSVVHPKGW DPWHYGRYEM 240 SFTYAEVECK GAGSDISGRV PWSDKLHSFY TKQQFSISNF IDQDQWISNI PRF 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-55 | 101 | 293 | 195 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 8.0e-56 | 39 | 287 | 256 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-60 | 61 | 289 | 229 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 1.0e-67 | 42 | 291 | 250 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-81 | 42 | 291 | 250 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB61046.1 | 0 | 1 | 293 | 1 | 244 | Similar to pectinesterase; F2P16.5 [Arabidopsis thaliana] |
RefSeq | NP_198033.2 | 0 | 1 | 293 | 1 | 293 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002318946.1 | 0 | 41 | 291 | 92 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 41 | 291 | 92 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 41 | 291 | 93 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-29 | 42 | 287 | 63 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-16 | 101 | 287 | 110 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000002 | 58 | 231 | 111 | 304 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000001 | 61 | 231 | 88 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000001 | 61 | 231 | 88 | 280 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |